Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-79]:
1fv1c_PU0_1-79
CI=2.59


[80-179 ]:
1fv1c_PU0_80-179
CI=5.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-63]:
1fv1c_PU1_1-63
CI=2.94


[64-79]:
1fv1c_PU1_64-79
CI=0.22


[80-179 ]:
1fv1c_PU1_80-179
CI=5.09


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1fv1c_PU2_1-32
CI=2.98


[33-63]:
1fv1c_PU2_33-63
CI=0.73


[64-79]:
1fv1c_PU2_64-79
CI=0.22


[80-179 ]:
1fv1c_PU2_80-179
CI=5.09


Level 3
PU
Molecule needs Java 1.4 Structure


[1-32]:
1fv1c_PU3_1-32
CI=2.98


[33-63]:
1fv1c_PU3_33-63
CI=0.73


[64-79]:
1fv1c_PU3_64-79
CI=0.22


[80-104]:
1fv1c_PU3_80-104
CI=1.37


[105-150]:
1fv1c_PU3_105-150
CI=3.12


[151-179 ]:
1fv1c_PU3_151-179
CI=2.29


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-32]:
1fv1c_PU_1-32
CI=2.98


[33-63]:
1fv1c_PU_33-63
CI=0.73


[64-79]:
1fv1c_PU_64-79
CI=0.22


[80-104]:
1fv1c_PU_80-104
CI=1.37


[105-127]:
1fv1c_PU_105-127
CI=0.49


[128-150]:
1fv1c_PU_128-150
CI=2.54


[151-179 ]:
1fv1c_PU_151-179
CI=2.29