Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-32]:
1fw9a_PU0_1-32
CI=0.00


[33-122]:
1fw9a_PU0_33-122
CI=3.44


[123-164 ]:
1fw9a_PU0_123-164
CI=3.75


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1fw9a_PU1_1-32
CI=0.00


[33-54]:
1fw9a_PU1_33-54
CI=0.51


[55-72]:
1fw9a_PU1_55-72
CI=0.82


[73-122]:
1fw9a_PU1_73-122
CI=2.18


[123-164 ]:
1fw9a_PU1_123-164
CI=3.75


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1fw9a_PU2_1-32
CI=0.00


[33-54]:
1fw9a_PU2_33-54
CI=0.51


[55-72]:
1fw9a_PU2_55-72
CI=0.82


[73-93]:
1fw9a_PU2_73-93
CI=2.86


[94-122]:
1fw9a_PU2_94-122
CI=0.71


[123-164 ]:
1fw9a_PU2_123-164
CI=3.75


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1fw9a_PU_1-32
CI=0.00


[33-54]:
1fw9a_PU_33-54
CI=0.51


[55-72]:
1fw9a_PU_55-72
CI=0.82


[73-93]:
1fw9a_PU_73-93
CI=2.86


[94-122]:
1fw9a_PU_94-122
CI=0.71


[123-144]:
1fw9a_PU_123-144
CI=2.48


[145-164 ]:
1fw9a_PU_145-164
CI=0.36