Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-262]:
1fxoa_PU0_1-262
CI=4.19


[263-292 ]:
1fxoa_PU0_263-292
CI=1.13


Level 1
PU
Molecule needs Java 1.4 Structure


[1-126]:
1fxoa_PU1_1-126
CI=3.54


[127-218]:
1fxoa_PU1_127-218
CI=3.68


[219-262]:
1fxoa_PU1_219-262
CI=0.82


[263-292 ]:
1fxoa_PU1_263-292
CI=1.13


Level 2
PU
Molecule needs Java 1.4 Structure


[1-126]:
1fxoa_PU2_1-126
CI=3.54


[127-218]:
1fxoa_PU2_127-218
CI=3.68


[219-237]:
1fxoa_PU2_219-237
CI=0.96


[238-262]:
1fxoa_PU2_238-262
CI=0.67


[263-292 ]:
1fxoa_PU2_263-292
CI=1.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-126]:
1fxoa_PU3_1-126
CI=3.54


[127-177]:
1fxoa_PU3_127-177
CI=3.70


[178-197]:
1fxoa_PU3_178-197
CI=0.56


[198-218]:
1fxoa_PU3_198-218
CI=0.35


[219-237]:
1fxoa_PU3_219-237
CI=0.96


[238-262]:
1fxoa_PU3_238-262
CI=0.67


[263-292 ]:
1fxoa_PU3_263-292
CI=1.13


Level 4
PU
Molecule needs Java 1.4 Structure


[1-47]:
1fxoa_PU4_1-47
CI=1.33


[48-100]:
1fxoa_PU4_48-100
CI=2.67


[101-126]:
1fxoa_PU4_101-126
CI=0.21


[127-177]:
1fxoa_PU4_127-177
CI=3.70


[178-197]:
1fxoa_PU4_178-197
CI=0.56


[198-218]:
1fxoa_PU4_198-218
CI=0.35


[219-237]:
1fxoa_PU4_219-237
CI=0.96


[238-262]:
1fxoa_PU4_238-262
CI=0.67


[263-292 ]:
1fxoa_PU4_263-292
CI=1.13


Level 5
PU
Molecule needs Java 1.4 Structure


[1-47]:
1fxoa_PU5_1-47
CI=1.33


[48-83]:
1fxoa_PU5_48-83
CI=3.38


[84-100]:
1fxoa_PU5_84-100
CI=0.00


[101-126]:
1fxoa_PU5_101-126
CI=0.21


[127-177]:
1fxoa_PU5_127-177
CI=3.70


[178-197]:
1fxoa_PU5_178-197
CI=0.56


[198-218]:
1fxoa_PU5_198-218
CI=0.35


[219-237]:
1fxoa_PU5_219-237
CI=0.96


[238-262]:
1fxoa_PU5_238-262
CI=0.67


[263-292 ]:
1fxoa_PU5_263-292
CI=1.13


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1fxoa_PU6_1-25
CI=0.97


[26-47]:
1fxoa_PU6_26-47
CI=0.60


[48-83]:
1fxoa_PU6_48-83
CI=3.38


[84-100]:
1fxoa_PU6_84-100
CI=0.00


[101-126]:
1fxoa_PU6_101-126
CI=0.21


[127-177]:
1fxoa_PU6_127-177
CI=3.70


[178-197]:
1fxoa_PU6_178-197
CI=0.56


[198-218]:
1fxoa_PU6_198-218
CI=0.35


[219-237]:
1fxoa_PU6_219-237
CI=0.96


[238-262]:
1fxoa_PU6_238-262
CI=0.67


[263-292 ]:
1fxoa_PU6_263-292
CI=1.13


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1fxoa_PU7_1-25
CI=0.97


[26-47]:
1fxoa_PU7_26-47
CI=0.60


[48-83]:
1fxoa_PU7_48-83
CI=3.38


[84-100]:
1fxoa_PU7_84-100
CI=0.00


[101-126]:
1fxoa_PU7_101-126
CI=0.21


[127-143]:
1fxoa_PU7_127-143
CI=0.00


[144-177]:
1fxoa_PU7_144-177
CI=2.63


[178-197]:
1fxoa_PU7_178-197
CI=0.56


[198-218]:
1fxoa_PU7_198-218
CI=0.35


[219-237]:
1fxoa_PU7_219-237
CI=0.96


[238-262]:
1fxoa_PU7_238-262
CI=0.67


[263-292 ]:
1fxoa_PU7_263-292
CI=1.13


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1fxoa_PU8_1-25
CI=0.97


[26-47]:
1fxoa_PU8_26-47
CI=0.60


[48-83]:
1fxoa_PU8_48-83
CI=3.38


[84-100]:
1fxoa_PU8_84-100
CI=0.00


[101-126]:
1fxoa_PU8_101-126
CI=0.21


[127-143]:
1fxoa_PU8_127-143
CI=0.00


[144-161]:
1fxoa_PU8_144-161
CI=2.39


[162-177]:
1fxoa_PU8_162-177
CI=0.00


[178-197]:
1fxoa_PU8_178-197
CI=0.56


[198-218]:
1fxoa_PU8_198-218
CI=0.35


[219-237]:
1fxoa_PU8_219-237
CI=0.96


[238-262]:
1fxoa_PU8_238-262
CI=0.67


[263-292 ]:
1fxoa_PU8_263-292
CI=1.13


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1fxoa_PU_1-25
CI=0.97


[26-47]:
1fxoa_PU_26-47
CI=0.60


[48-66]:
1fxoa_PU_48-66
CI=0.48


[67-83]:
1fxoa_PU_67-83
CI=0.98


[84-100]:
1fxoa_PU_84-100
CI=0.00


[101-126]:
1fxoa_PU_101-126
CI=0.21


[127-143]:
1fxoa_PU_127-143
CI=0.00


[144-161]:
1fxoa_PU_144-161
CI=2.39


[162-177]:
1fxoa_PU_162-177
CI=0.00


[178-197]:
1fxoa_PU_178-197
CI=0.56


[198-218]:
1fxoa_PU_198-218
CI=0.35


[219-237]:
1fxoa_PU_219-237
CI=0.96


[238-262]:
1fxoa_PU_238-262
CI=0.67


[263-292 ]:
1fxoa_PU_263-292
CI=1.13