Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-188]:
1fy7a_PU0_1-188
CI=3.84


[189-260]:
1fy7a_PU0_189-260
CI=1.89


[261-273 ]:
1fy7a_PU0_261-273
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-60]:
1fy7a_PU1_1-60
CI=2.66


[61-188]:
1fy7a_PU1_61-188
CI=3.69


[189-260]:
1fy7a_PU1_189-260
CI=1.89


[261-273 ]:
1fy7a_PU1_261-273
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-60]:
1fy7a_PU2_1-60
CI=2.66


[61-188]:
1fy7a_PU2_61-188
CI=3.69


[189-244]:
1fy7a_PU2_189-244
CI=2.08


[245-260]:
1fy7a_PU2_245-260
CI=0.00


[261-273 ]:
1fy7a_PU2_261-273
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-60]:
1fy7a_PU3_1-60
CI=2.66


[61-79]:
1fy7a_PU3_61-79
CI=2.17


[80-109]:
1fy7a_PU3_80-109
CI=1.81


[110-188]:
1fy7a_PU3_110-188
CI=3.10


[189-244]:
1fy7a_PU3_189-244
CI=2.08


[245-260]:
1fy7a_PU3_245-260
CI=0.00


[261-273 ]:
1fy7a_PU3_261-273
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-35]:
1fy7a_PU4_1-35
CI=2.40


[36-60]:
1fy7a_PU4_36-60
CI=1.11


[61-79]:
1fy7a_PU4_61-79
CI=2.17


[80-109]:
1fy7a_PU4_80-109
CI=1.81


[110-188]:
1fy7a_PU4_110-188
CI=3.10


[189-244]:
1fy7a_PU4_189-244
CI=2.08


[245-260]:
1fy7a_PU4_245-260
CI=0.00


[261-273 ]:
1fy7a_PU4_261-273
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-35]:
1fy7a_PU5_1-35
CI=2.40


[36-60]:
1fy7a_PU5_36-60
CI=1.11


[61-79]:
1fy7a_PU5_61-79
CI=2.17


[80-109]:
1fy7a_PU5_80-109
CI=1.81


[110-163]:
1fy7a_PU5_110-163
CI=3.48


[164-188]:
1fy7a_PU5_164-188
CI=0.37


[189-244]:
1fy7a_PU5_189-244
CI=2.08


[245-260]:
1fy7a_PU5_245-260
CI=0.00


[261-273 ]:
1fy7a_PU5_261-273
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-35]:
1fy7a_PU6_1-35
CI=2.40


[36-60]:
1fy7a_PU6_36-60
CI=1.11


[61-79]:
1fy7a_PU6_61-79
CI=2.17


[80-109]:
1fy7a_PU6_80-109
CI=1.81


[110-163]:
1fy7a_PU6_110-163
CI=3.48


[164-188]:
1fy7a_PU6_164-188
CI=0.37


[189-207]:
1fy7a_PU6_189-207
CI=0.20


[208-244]:
1fy7a_PU6_208-244
CI=1.64


[245-260]:
1fy7a_PU6_245-260
CI=0.00


[261-273 ]:
1fy7a_PU6_261-273
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-35]:
1fy7a_PU7_1-35
CI=2.40


[36-60]:
1fy7a_PU7_36-60
CI=1.11


[61-79]:
1fy7a_PU7_61-79
CI=2.17


[80-109]:
1fy7a_PU7_80-109
CI=1.81


[110-163]:
1fy7a_PU7_110-163
CI=3.48


[164-188]:
1fy7a_PU7_164-188
CI=0.37


[189-207]:
1fy7a_PU7_189-207
CI=0.20


[208-226]:
1fy7a_PU7_208-226
CI=0.86


[227-244]:
1fy7a_PU7_227-244
CI=1.54


[245-260]:
1fy7a_PU7_245-260
CI=0.00


[261-273 ]:
1fy7a_PU7_261-273
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-35]:
1fy7a_PU_1-35
CI=2.40


[36-60]:
1fy7a_PU_36-60
CI=1.11


[61-79]:
1fy7a_PU_61-79
CI=2.17


[80-109]:
1fy7a_PU_80-109
CI=1.81


[110-145]:
1fy7a_PU_110-145
CI=3.29


[146-163]:
1fy7a_PU_146-163
CI=0.30


[164-188]:
1fy7a_PU_164-188
CI=0.37


[189-207]:
1fy7a_PU_189-207
CI=0.20


[208-226]:
1fy7a_PU_208-226
CI=0.86


[227-244]:
1fy7a_PU_227-244
CI=1.54


[245-260]:
1fy7a_PU_245-260
CI=0.00


[261-273 ]:
1fy7a_PU_261-273
CI=0.00