Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-33]:
1g1ka_PU0_1-33
CI=2.41


[34-98]:
1g1ka_PU0_34-98
CI=3.80


[99-143 ]:
1g1ka_PU0_99-143
CI=2.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-33]:
1g1ka_PU1_1-33
CI=2.41


[34-79]:
1g1ka_PU1_34-79
CI=3.04


[80-98]:
1g1ka_PU1_80-98
CI=0.20


[99-143 ]:
1g1ka_PU1_99-143
CI=2.09


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1g1ka_PU2_1-33
CI=2.41


[34-79]:
1g1ka_PU2_34-79
CI=3.04


[80-98]:
1g1ka_PU2_80-98
CI=0.20


[99-117]:
1g1ka_PU2_99-117
CI=0.00


[118-143 ]:
1g1ka_PU2_118-143
CI=0.65


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-33]:
1g1ka_PU_1-33
CI=2.41


[34-53]:
1g1ka_PU_34-53
CI=0.00


[54-79]:
1g1ka_PU_54-79
CI=1.74


[80-98]:
1g1ka_PU_80-98
CI=0.20


[99-117]:
1g1ka_PU_99-117
CI=0.00


[118-143 ]:
1g1ka_PU_118-143
CI=0.65