Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1g2qa_PU0_1-46
CI=1.91


[47-178 ]:
1g2qa_PU0_47-178
CI=4.83


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1g2qa_PU1_1-29
CI=1.51


[30-46]:
1g2qa_PU1_30-46
CI=0.55


[47-178 ]:
1g2qa_PU1_47-178
CI=4.83


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1g2qa_PU2_1-29
CI=1.51


[30-46]:
1g2qa_PU2_30-46
CI=0.55


[47-90]:
1g2qa_PU2_47-90
CI=2.39


[91-118]:
1g2qa_PU2_91-118
CI=2.64


[119-178 ]:
1g2qa_PU2_119-178
CI=4.25


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1g2qa_PU3_1-29
CI=1.51


[30-46]:
1g2qa_PU3_30-46
CI=0.55


[47-65]:
1g2qa_PU3_47-65
CI=0.00


[66-90]:
1g2qa_PU3_66-90
CI=1.28


[91-118]:
1g2qa_PU3_91-118
CI=2.64


[119-178 ]:
1g2qa_PU3_119-178
CI=4.25


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-29]:
1g2qa_PU_1-29
CI=1.51


[30-46]:
1g2qa_PU_30-46
CI=0.55


[47-65]:
1g2qa_PU_47-65
CI=0.00


[66-90]:
1g2qa_PU_66-90
CI=1.28


[91-118]:
1g2qa_PU_91-118
CI=2.64


[119-136]:
1g2qa_PU_119-136
CI=0.10


[137-152]:
1g2qa_PU_137-152
CI=0.57


[153-178 ]:
1g2qa_PU_153-178
CI=1.97