Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-32]:
1g3ka_PU0_1-32
CI=2.62


[33-114]:
1g3ka_PU0_33-114
CI=3.49


[115-173 ]:
1g3ka_PU0_115-173
CI=2.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1g3ka_PU1_1-32
CI=2.62


[33-57]:
1g3ka_PU1_33-57
CI=1.65


[58-90]:
1g3ka_PU1_58-90
CI=1.14


[91-114]:
1g3ka_PU1_91-114
CI=2.60


[115-173 ]:
1g3ka_PU1_115-173
CI=2.39


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1g3ka_PU2_1-32
CI=2.62


[33-57]:
1g3ka_PU2_33-57
CI=1.65


[58-74]:
1g3ka_PU2_58-74
CI=1.18


[75-90]:
1g3ka_PU2_75-90
CI=0.46


[91-114]:
1g3ka_PU2_91-114
CI=2.60


[115-173 ]:
1g3ka_PU2_115-173
CI=2.39


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1g3ka_PU_1-32
CI=2.62


[33-57]:
1g3ka_PU_33-57
CI=1.65


[58-74]:
1g3ka_PU_58-74
CI=1.18


[75-90]:
1g3ka_PU_75-90
CI=0.46


[91-114]:
1g3ka_PU_91-114
CI=2.60


[115-132]:
1g3ka_PU_115-132
CI=0.72


[133-148]:
1g3ka_PU_133-148
CI=0.56


[149-173 ]:
1g3ka_PU_149-173
CI=1.11