Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-167]:
1g4ma_PU0_1-167
CI=4.43


[168-345]:
1g4ma_PU0_168-345
CI=5.01


[346-356 ]:
1g4ma_PU0_346-356
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-57]:
1g4ma_PU1_1-57
CI=1.99


[58-73]:
1g4ma_PU1_58-73
CI=1.61


[74-167]:
1g4ma_PU1_74-167
CI=1.75


[168-345]:
1g4ma_PU1_168-345
CI=5.01


[346-356 ]:
1g4ma_PU1_346-356
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-57]:
1g4ma_PU2_1-57
CI=1.99


[58-73]:
1g4ma_PU2_58-73
CI=1.61


[74-114]:
1g4ma_PU2_74-114
CI=0.73


[115-167]:
1g4ma_PU2_115-167
CI=2.47


[168-345]:
1g4ma_PU2_168-345
CI=5.01


[346-356 ]:
1g4ma_PU2_346-356
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-57]:
1g4ma_PU3_1-57
CI=1.99


[58-73]:
1g4ma_PU3_58-73
CI=1.61


[74-114]:
1g4ma_PU3_74-114
CI=0.73


[115-139]:
1g4ma_PU3_115-139
CI=1.73


[140-167]:
1g4ma_PU3_140-167
CI=2.17


[168-345]:
1g4ma_PU3_168-345
CI=5.01


[346-356 ]:
1g4ma_PU3_346-356
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-39]:
1g4ma_PU4_1-39
CI=2.70


[40-57]:
1g4ma_PU4_40-57
CI=0.00


[58-73]:
1g4ma_PU4_58-73
CI=1.61


[74-114]:
1g4ma_PU4_74-114
CI=0.73


[115-139]:
1g4ma_PU4_115-139
CI=1.73


[140-167]:
1g4ma_PU4_140-167
CI=2.17


[168-345]:
1g4ma_PU4_168-345
CI=5.01


[346-356 ]:
1g4ma_PU4_346-356
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-39]:
1g4ma_PU5_1-39
CI=2.70


[40-57]:
1g4ma_PU5_40-57
CI=0.00


[58-73]:
1g4ma_PU5_58-73
CI=1.61


[74-90]:
1g4ma_PU5_74-90
CI=0.32


[91-114]:
1g4ma_PU5_91-114
CI=0.38


[115-139]:
1g4ma_PU5_115-139
CI=1.73


[140-167]:
1g4ma_PU5_140-167
CI=2.17


[168-345]:
1g4ma_PU5_168-345
CI=5.01


[346-356 ]:
1g4ma_PU5_346-356
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-39]:
1g4ma_PU6_1-39
CI=2.70


[40-57]:
1g4ma_PU6_40-57
CI=0.00


[58-73]:
1g4ma_PU6_58-73
CI=1.61


[74-90]:
1g4ma_PU6_74-90
CI=0.32


[91-114]:
1g4ma_PU6_91-114
CI=0.38


[115-139]:
1g4ma_PU6_115-139
CI=1.73


[140-167]:
1g4ma_PU6_140-167
CI=2.17


[168-272]:
1g4ma_PU6_168-272
CI=3.95


[273-296]:
1g4ma_PU6_273-296
CI=1.42


[297-345]:
1g4ma_PU6_297-345
CI=2.28


[346-356 ]:
1g4ma_PU6_346-356
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-39]:
1g4ma_PU7_1-39
CI=2.70


[40-57]:
1g4ma_PU7_40-57
CI=0.00


[58-73]:
1g4ma_PU7_58-73
CI=1.61


[74-90]:
1g4ma_PU7_74-90
CI=0.32


[91-114]:
1g4ma_PU7_91-114
CI=0.38


[115-139]:
1g4ma_PU7_115-139
CI=1.73


[140-167]:
1g4ma_PU7_140-167
CI=2.17


[168-231]:
1g4ma_PU7_168-231
CI=2.71


[232-247]:
1g4ma_PU7_232-247
CI=2.21


[248-272]:
1g4ma_PU7_248-272
CI=0.60


[273-296]:
1g4ma_PU7_273-296
CI=1.42


[297-345]:
1g4ma_PU7_297-345
CI=2.28


[346-356 ]:
1g4ma_PU7_346-356
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-39]:
1g4ma_PU8_1-39
CI=2.70


[40-57]:
1g4ma_PU8_40-57
CI=0.00


[58-73]:
1g4ma_PU8_58-73
CI=1.61


[74-90]:
1g4ma_PU8_74-90
CI=0.32


[91-114]:
1g4ma_PU8_91-114
CI=0.38


[115-139]:
1g4ma_PU8_115-139
CI=1.73


[140-167]:
1g4ma_PU8_140-167
CI=2.17


[168-231]:
1g4ma_PU8_168-231
CI=2.71


[232-247]:
1g4ma_PU8_232-247
CI=2.21


[248-272]:
1g4ma_PU8_248-272
CI=0.60


[273-296]:
1g4ma_PU8_273-296
CI=1.42


[297-316]:
1g4ma_PU8_297-316
CI=1.58


[317-345]:
1g4ma_PU8_317-345
CI=1.97


[346-356 ]:
1g4ma_PU8_346-356
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1g4ma_PU9_1-20
CI=2.43


[21-39]:
1g4ma_PU9_21-39
CI=0.78


[40-57]:
1g4ma_PU9_40-57
CI=0.00


[58-73]:
1g4ma_PU9_58-73
CI=1.61


[74-90]:
1g4ma_PU9_74-90
CI=0.32


[91-114]:
1g4ma_PU9_91-114
CI=0.38


[115-139]:
1g4ma_PU9_115-139
CI=1.73


[140-167]:
1g4ma_PU9_140-167
CI=2.17


[168-231]:
1g4ma_PU9_168-231
CI=2.71


[232-247]:
1g4ma_PU9_232-247
CI=2.21


[248-272]:
1g4ma_PU9_248-272
CI=0.60


[273-296]:
1g4ma_PU9_273-296
CI=1.42


[297-316]:
1g4ma_PU9_297-316
CI=1.58


[317-345]:
1g4ma_PU9_317-345
CI=1.97


[346-356 ]:
1g4ma_PU9_346-356
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-20]:
1g4ma_PU_1-20
CI=2.43


[21-39]:
1g4ma_PU_21-39
CI=0.78


[40-57]:
1g4ma_PU_40-57
CI=0.00


[58-73]:
1g4ma_PU_58-73
CI=1.61


[74-90]:
1g4ma_PU_74-90
CI=0.32


[91-114]:
1g4ma_PU_91-114
CI=0.38


[115-139]:
1g4ma_PU_115-139
CI=1.73


[140-167]:
1g4ma_PU_140-167
CI=2.17


[168-184]:
1g4ma_PU_168-184
CI=0.00


[185-231]:
1g4ma_PU_185-231
CI=2.25


[232-247]:
1g4ma_PU_232-247
CI=2.21


[248-272]:
1g4ma_PU_248-272
CI=0.60


[273-296]:
1g4ma_PU_273-296
CI=1.42


[297-316]:
1g4ma_PU_297-316
CI=1.58


[317-345]:
1g4ma_PU_317-345
CI=1.97


[346-356 ]:
1g4ma_PU_346-356
CI=0.00