Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-171]:
1g55a_PU0_1-171
CI=3.82


[172-264]:
1g55a_PU0_172-264
CI=2.95


[265-311 ]:
1g55a_PU0_265-311
CI=1.29


Level 1
PU
Molecule needs Java 1.4 Structure


[1-95]:
1g55a_PU1_1-95
CI=3.56


[96-171]:
1g55a_PU1_96-171
CI=3.31


[172-264]:
1g55a_PU1_172-264
CI=2.95


[265-311 ]:
1g55a_PU1_265-311
CI=1.29


Level 2
PU
Molecule needs Java 1.4 Structure


[1-54]:
1g55a_PU2_1-54
CI=3.03


[55-95]:
1g55a_PU2_55-95
CI=1.94


[96-171]:
1g55a_PU2_96-171
CI=3.31


[172-264]:
1g55a_PU2_172-264
CI=2.95


[265-311 ]:
1g55a_PU2_265-311
CI=1.29


Level 3
PU
Molecule needs Java 1.4 Structure


[1-54]:
1g55a_PU3_1-54
CI=3.03


[55-95]:
1g55a_PU3_55-95
CI=1.94


[96-171]:
1g55a_PU3_96-171
CI=3.31


[172-264]:
1g55a_PU3_172-264
CI=2.95


[265-295]:
1g55a_PU3_265-295
CI=1.02


[296-311 ]:
1g55a_PU3_296-311
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-54]:
1g55a_PU4_1-54
CI=3.03


[55-95]:
1g55a_PU4_55-95
CI=1.94


[96-171]:
1g55a_PU4_96-171
CI=3.31


[172-208]:
1g55a_PU4_172-208
CI=0.66


[209-226]:
1g55a_PU4_209-226
CI=2.27


[227-264]:
1g55a_PU4_227-264
CI=2.01


[265-295]:
1g55a_PU4_265-295
CI=1.02


[296-311 ]:
1g55a_PU4_296-311
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-54]:
1g55a_PU5_1-54
CI=3.03


[55-95]:
1g55a_PU5_55-95
CI=1.94


[96-171]:
1g55a_PU5_96-171
CI=3.31


[172-190]:
1g55a_PU5_172-190
CI=0.00


[191-208]:
1g55a_PU5_191-208
CI=0.10


[209-226]:
1g55a_PU5_209-226
CI=2.27


[227-264]:
1g55a_PU5_227-264
CI=2.01


[265-295]:
1g55a_PU5_265-295
CI=1.02


[296-311 ]:
1g55a_PU5_296-311
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1g55a_PU6_1-31
CI=2.03


[32-54]:
1g55a_PU6_32-54
CI=1.38


[55-95]:
1g55a_PU6_55-95
CI=1.94


[96-171]:
1g55a_PU6_96-171
CI=3.31


[172-190]:
1g55a_PU6_172-190
CI=0.00


[191-208]:
1g55a_PU6_191-208
CI=0.10


[209-226]:
1g55a_PU6_209-226
CI=2.27


[227-264]:
1g55a_PU6_227-264
CI=2.01


[265-295]:
1g55a_PU6_265-295
CI=1.02


[296-311 ]:
1g55a_PU6_296-311
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-31]:
1g55a_PU7_1-31
CI=2.03


[32-54]:
1g55a_PU7_32-54
CI=1.38


[55-95]:
1g55a_PU7_55-95
CI=1.94


[96-122]:
1g55a_PU7_96-122
CI=0.07


[123-171]:
1g55a_PU7_123-171
CI=3.18


[172-190]:
1g55a_PU7_172-190
CI=0.00


[191-208]:
1g55a_PU7_191-208
CI=0.10


[209-226]:
1g55a_PU7_209-226
CI=2.27


[227-264]:
1g55a_PU7_227-264
CI=2.01


[265-295]:
1g55a_PU7_265-295
CI=1.02


[296-311 ]:
1g55a_PU7_296-311
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-31]:
1g55a_PU_1-31
CI=2.03


[32-54]:
1g55a_PU_32-54
CI=1.38


[55-95]:
1g55a_PU_55-95
CI=1.94


[96-122]:
1g55a_PU_96-122
CI=0.07


[123-150]:
1g55a_PU_123-150
CI=2.86


[151-171]:
1g55a_PU_151-171
CI=0.17


[172-190]:
1g55a_PU_172-190
CI=0.00


[191-208]:
1g55a_PU_191-208
CI=0.10


[209-226]:
1g55a_PU_209-226
CI=2.27


[227-264]:
1g55a_PU_227-264
CI=2.01


[265-295]:
1g55a_PU_265-295
CI=1.02


[296-311 ]:
1g55a_PU_296-311
CI=0.00