Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1g5ta_PU0_1-19
CI=0.58


[20-86]:
1g5ta_PU0_20-86
CI=1.83


[87-157 ]:
1g5ta_PU0_87-157
CI=2.31


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1g5ta_PU1_1-19
CI=0.58


[20-60]:
1g5ta_PU1_20-60
CI=1.58


[61-86]:
1g5ta_PU1_61-86
CI=0.73


[87-157 ]:
1g5ta_PU1_87-157
CI=2.31


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1g5ta_PU2_1-19
CI=0.58


[20-60]:
1g5ta_PU2_20-60
CI=1.58


[61-86]:
1g5ta_PU2_61-86
CI=0.73


[87-137]:
1g5ta_PU2_87-137
CI=2.82


[138-157 ]:
1g5ta_PU2_138-157
CI=0.09


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1g5ta_PU3_1-19
CI=0.58


[20-36]:
1g5ta_PU3_20-36
CI=0.42


[37-60]:
1g5ta_PU3_37-60
CI=0.78


[61-86]:
1g5ta_PU3_61-86
CI=0.73


[87-137]:
1g5ta_PU3_87-137
CI=2.82


[138-157 ]:
1g5ta_PU3_138-157
CI=0.09


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1g5ta_PU_1-19
CI=0.58


[20-36]:
1g5ta_PU_20-36
CI=0.42


[37-60]:
1g5ta_PU_37-60
CI=0.78


[61-86]:
1g5ta_PU_61-86
CI=0.73


[87-112]:
1g5ta_PU_87-112
CI=0.29


[113-137]:
1g5ta_PU_113-137
CI=0.15


[138-157 ]:
1g5ta_PU_138-157
CI=0.09