Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-31]:
1g6ga_PU0_1-31
CI=2.23


[32-111]:
1g6ga_PU0_32-111
CI=4.72


[112-127 ]:
1g6ga_PU0_112-127
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1g6ga_PU1_1-31
CI=2.23


[32-74]:
1g6ga_PU1_32-74
CI=4.46


[75-111]:
1g6ga_PU1_75-111
CI=2.36


[112-127 ]:
1g6ga_PU1_112-127
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1g6ga_PU2_1-31
CI=2.23


[32-74]:
1g6ga_PU2_32-74
CI=4.46


[75-94]:
1g6ga_PU2_75-94
CI=1.96


[95-111]:
1g6ga_PU2_95-111
CI=0.11


[112-127 ]:
1g6ga_PU2_112-127
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-31]:
1g6ga_PU_1-31
CI=2.23


[32-58]:
1g6ga_PU_32-58
CI=2.80


[59-74]:
1g6ga_PU_59-74
CI=2.09


[75-94]:
1g6ga_PU_75-94
CI=1.96


[95-111]:
1g6ga_PU_95-111
CI=0.11


[112-127 ]:
1g6ga_PU_112-127
CI=0.00