Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-68]:
1g8ea_PU0_1-68
CI=1.12


[69-98 ]:
1g8ea_PU0_69-98
CI=0.06


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-18]:
1g8ea_PU_1-18
CI=0.00


[19-49]:
1g8ea_PU_19-49
CI=1.09


[50-68]:
1g8ea_PU_50-68
CI=0.19


[69-98 ]:
1g8ea_PU_69-98
CI=0.06