Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1g8qa_PU0_1-17
CI=0.00


[18-78]:
1g8qa_PU0_18-78
CI=2.66


[79-90 ]:
1g8qa_PU0_79-90
CI=0.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1g8qa_PU1_1-17
CI=0.00


[18-34]:
1g8qa_PU1_18-34
CI=2.06


[35-78]:
1g8qa_PU1_35-78
CI=2.36


[79-90 ]:
1g8qa_PU1_79-90
CI=0.30


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1g8qa_PU_1-17
CI=0.00


[18-34]:
1g8qa_PU_18-34
CI=2.06


[35-62]:
1g8qa_PU_35-62
CI=0.93


[63-78]:
1g8qa_PU_63-78
CI=0.11


[79-90 ]:
1g8qa_PU_79-90
CI=0.30