Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1g9za_PU0_1-44
CI=2.01


[45-76]:
1g9za_PU0_45-76
CI=2.84


[77-152 ]:
1g9za_PU0_77-152
CI=1.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1g9za_PU1_1-20
CI=0.18


[21-44]:
1g9za_PU1_21-44
CI=2.84


[45-76]:
1g9za_PU1_45-76
CI=2.84


[77-152 ]:
1g9za_PU1_77-152
CI=1.81


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1g9za_PU2_1-20
CI=0.18


[21-44]:
1g9za_PU2_21-44
CI=2.84


[45-76]:
1g9za_PU2_45-76
CI=2.84


[77-109]:
1g9za_PU2_77-109
CI=1.32


[110-152 ]:
1g9za_PU2_110-152
CI=1.14


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1g9za_PU3_1-20
CI=0.18


[21-44]:
1g9za_PU3_21-44
CI=2.84


[45-76]:
1g9za_PU3_45-76
CI=2.84


[77-109]:
1g9za_PU3_77-109
CI=1.32


[110-126]:
1g9za_PU3_110-126
CI=1.39


[127-152 ]:
1g9za_PU3_127-152
CI=0.35


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-20]:
1g9za_PU_1-20
CI=0.18


[21-44]:
1g9za_PU_21-44
CI=2.84


[45-76]:
1g9za_PU_45-76
CI=2.84


[77-93]:
1g9za_PU_77-93
CI=0.11


[94-109]:
1g9za_PU_94-109
CI=0.00


[110-126]:
1g9za_PU_110-126
CI=1.39


[127-152 ]:
1g9za_PU_127-152
CI=0.35