Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU0_1-22
CI=0.09


[23-130]:
1ga6a_PU0_23-130
CI=3.89


[131-369 ]:
1ga6a_PU0_131-369
CI=5.94


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU1_1-22
CI=0.09


[23-130]:
1ga6a_PU1_23-130
CI=3.89


[131-265]:
1ga6a_PU1_131-265
CI=4.97


[266-283]:
1ga6a_PU1_266-283
CI=2.78


[284-369 ]:
1ga6a_PU1_284-369
CI=1.99


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU2_1-22
CI=0.09


[23-130]:
1ga6a_PU2_23-130
CI=3.89


[131-265]:
1ga6a_PU2_131-265
CI=4.97


[266-283]:
1ga6a_PU2_266-283
CI=2.78


[284-308]:
1ga6a_PU2_284-308
CI=0.30


[309-369 ]:
1ga6a_PU2_309-369
CI=2.51


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU3_1-22
CI=0.09


[23-130]:
1ga6a_PU3_23-130
CI=3.89


[131-265]:
1ga6a_PU3_131-265
CI=4.97


[266-283]:
1ga6a_PU3_266-283
CI=2.78


[284-308]:
1ga6a_PU3_284-308
CI=0.30


[309-326]:
1ga6a_PU3_309-326
CI=0.31


[327-354]:
1ga6a_PU3_327-354
CI=3.18


[355-369 ]:
1ga6a_PU3_355-369
CI=0.12


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU4_1-22
CI=0.09


[23-130]:
1ga6a_PU4_23-130
CI=3.89


[131-202]:
1ga6a_PU4_131-202
CI=3.74


[203-218]:
1ga6a_PU4_203-218
CI=2.31


[219-265]:
1ga6a_PU4_219-265
CI=2.15


[266-283]:
1ga6a_PU4_266-283
CI=2.78


[284-308]:
1ga6a_PU4_284-308
CI=0.30


[309-326]:
1ga6a_PU4_309-326
CI=0.31


[327-354]:
1ga6a_PU4_327-354
CI=3.18


[355-369 ]:
1ga6a_PU4_355-369
CI=0.12


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU5_1-22
CI=0.09


[23-40]:
1ga6a_PU5_23-40
CI=0.00


[41-56]:
1ga6a_PU5_41-56
CI=0.56


[57-130]:
1ga6a_PU5_57-130
CI=2.02


[131-202]:
1ga6a_PU5_131-202
CI=3.74


[203-218]:
1ga6a_PU5_203-218
CI=2.31


[219-265]:
1ga6a_PU5_219-265
CI=2.15


[266-283]:
1ga6a_PU5_266-283
CI=2.78


[284-308]:
1ga6a_PU5_284-308
CI=0.30


[309-326]:
1ga6a_PU5_309-326
CI=0.31


[327-354]:
1ga6a_PU5_327-354
CI=3.18


[355-369 ]:
1ga6a_PU5_355-369
CI=0.12


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU6_1-22
CI=0.09


[23-40]:
1ga6a_PU6_23-40
CI=0.00


[41-56]:
1ga6a_PU6_41-56
CI=0.56


[57-72]:
1ga6a_PU6_57-72
CI=0.11


[73-93]:
1ga6a_PU6_73-93
CI=0.00


[94-130]:
1ga6a_PU6_94-130
CI=0.91


[131-202]:
1ga6a_PU6_131-202
CI=3.74


[203-218]:
1ga6a_PU6_203-218
CI=2.31


[219-265]:
1ga6a_PU6_219-265
CI=2.15


[266-283]:
1ga6a_PU6_266-283
CI=2.78


[284-308]:
1ga6a_PU6_284-308
CI=0.30


[309-326]:
1ga6a_PU6_309-326
CI=0.31


[327-354]:
1ga6a_PU6_327-354
CI=3.18


[355-369 ]:
1ga6a_PU6_355-369
CI=0.12


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU7_1-22
CI=0.09


[23-40]:
1ga6a_PU7_23-40
CI=0.00


[41-56]:
1ga6a_PU7_41-56
CI=0.56


[57-72]:
1ga6a_PU7_57-72
CI=0.11


[73-93]:
1ga6a_PU7_73-93
CI=0.00


[94-130]:
1ga6a_PU7_94-130
CI=0.91


[131-202]:
1ga6a_PU7_131-202
CI=3.74


[203-218]:
1ga6a_PU7_203-218
CI=2.31


[219-240]:
1ga6a_PU7_219-240
CI=1.36


[241-265]:
1ga6a_PU7_241-265
CI=0.90


[266-283]:
1ga6a_PU7_266-283
CI=2.78


[284-308]:
1ga6a_PU7_284-308
CI=0.30


[309-326]:
1ga6a_PU7_309-326
CI=0.31


[327-354]:
1ga6a_PU7_327-354
CI=3.18


[355-369 ]:
1ga6a_PU7_355-369
CI=0.12


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU8_1-22
CI=0.09


[23-40]:
1ga6a_PU8_23-40
CI=0.00


[41-56]:
1ga6a_PU8_41-56
CI=0.56


[57-72]:
1ga6a_PU8_57-72
CI=0.11


[73-93]:
1ga6a_PU8_73-93
CI=0.00


[94-114]:
1ga6a_PU8_94-114
CI=0.70


[115-130]:
1ga6a_PU8_115-130
CI=0.12


[131-202]:
1ga6a_PU8_131-202
CI=3.74


[203-218]:
1ga6a_PU8_203-218
CI=2.31


[219-240]:
1ga6a_PU8_219-240
CI=1.36


[241-265]:
1ga6a_PU8_241-265
CI=0.90


[266-283]:
1ga6a_PU8_266-283
CI=2.78


[284-308]:
1ga6a_PU8_284-308
CI=0.30


[309-326]:
1ga6a_PU8_309-326
CI=0.31


[327-354]:
1ga6a_PU8_327-354
CI=3.18


[355-369 ]:
1ga6a_PU8_355-369
CI=0.12


Level 9
PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU9_1-22
CI=0.09


[23-40]:
1ga6a_PU9_23-40
CI=0.00


[41-56]:
1ga6a_PU9_41-56
CI=0.56


[57-72]:
1ga6a_PU9_57-72
CI=0.11


[73-93]:
1ga6a_PU9_73-93
CI=0.00


[94-114]:
1ga6a_PU9_94-114
CI=0.70


[115-130]:
1ga6a_PU9_115-130
CI=0.12


[131-146]:
1ga6a_PU9_131-146
CI=0.23


[147-165]:
1ga6a_PU9_147-165
CI=0.19


[166-202]:
1ga6a_PU9_166-202
CI=2.73


[203-218]:
1ga6a_PU9_203-218
CI=2.31


[219-240]:
1ga6a_PU9_219-240
CI=1.36


[241-265]:
1ga6a_PU9_241-265
CI=0.90


[266-283]:
1ga6a_PU9_266-283
CI=2.78


[284-308]:
1ga6a_PU9_284-308
CI=0.30


[309-326]:
1ga6a_PU9_309-326
CI=0.31


[327-354]:
1ga6a_PU9_327-354
CI=3.18


[355-369 ]:
1ga6a_PU9_355-369
CI=0.12


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-22]:
1ga6a_PU_1-22
CI=0.09


[23-40]:
1ga6a_PU_23-40
CI=0.00


[41-56]:
1ga6a_PU_41-56
CI=0.56


[57-72]:
1ga6a_PU_57-72
CI=0.11


[73-93]:
1ga6a_PU_73-93
CI=0.00


[94-114]:
1ga6a_PU_94-114
CI=0.70


[115-130]:
1ga6a_PU_115-130
CI=0.12


[131-146]:
1ga6a_PU_131-146
CI=0.23


[147-165]:
1ga6a_PU_147-165
CI=0.19


[166-186]:
1ga6a_PU_166-186
CI=1.59


[187-202]:
1ga6a_PU_187-202
CI=0.58


[203-218]:
1ga6a_PU_203-218
CI=2.31


[219-240]:
1ga6a_PU_219-240
CI=1.36


[241-265]:
1ga6a_PU_241-265
CI=0.90


[266-283]:
1ga6a_PU_266-283
CI=2.78


[284-308]:
1ga6a_PU_284-308
CI=0.30


[309-326]:
1ga6a_PU_309-326
CI=0.31


[327-354]:
1ga6a_PU_327-354
CI=3.18


[355-369 ]:
1ga6a_PU_355-369
CI=0.12