Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-110]:
1ga8a_PU0_1-110
CI=3.26


[111-230]:
1ga8a_PU0_111-230
CI=2.81


[231-271 ]:
1ga8a_PU0_231-271
CI=1.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-110]:
1ga8a_PU1_1-110
CI=3.26


[111-230]:
1ga8a_PU1_111-230
CI=2.81


[231-254]:
1ga8a_PU1_231-254
CI=1.32


[255-271 ]:
1ga8a_PU1_255-271
CI=0.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-110]:
1ga8a_PU2_1-110
CI=3.26


[111-158]:
1ga8a_PU2_111-158
CI=1.99


[159-180]:
1ga8a_PU2_159-180
CI=0.00


[181-230]:
1ga8a_PU2_181-230
CI=1.26


[231-254]:
1ga8a_PU2_231-254
CI=1.32


[255-271 ]:
1ga8a_PU2_255-271
CI=0.22


Level 3
PU
Molecule needs Java 1.4 Structure


[1-110]:
1ga8a_PU3_1-110
CI=3.26


[111-158]:
1ga8a_PU3_111-158
CI=1.99


[159-180]:
1ga8a_PU3_159-180
CI=0.00


[181-197]:
1ga8a_PU3_181-197
CI=0.00


[198-230]:
1ga8a_PU3_198-230
CI=1.89


[231-254]:
1ga8a_PU3_231-254
CI=1.32


[255-271 ]:
1ga8a_PU3_255-271
CI=0.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ga8a_PU4_1-63
CI=3.03


[64-83]:
1ga8a_PU4_64-83
CI=1.10


[84-110]:
1ga8a_PU4_84-110
CI=0.14


[111-158]:
1ga8a_PU4_111-158
CI=1.99


[159-180]:
1ga8a_PU4_159-180
CI=0.00


[181-197]:
1ga8a_PU4_181-197
CI=0.00


[198-230]:
1ga8a_PU4_198-230
CI=1.89


[231-254]:
1ga8a_PU4_231-254
CI=1.32


[255-271 ]:
1ga8a_PU4_255-271
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ga8a_PU5_1-63
CI=3.03


[64-83]:
1ga8a_PU5_64-83
CI=1.10


[84-110]:
1ga8a_PU5_84-110
CI=0.14


[111-127]:
1ga8a_PU5_111-127
CI=0.11


[128-158]:
1ga8a_PU5_128-158
CI=1.03


[159-180]:
1ga8a_PU5_159-180
CI=0.00


[181-197]:
1ga8a_PU5_181-197
CI=0.00


[198-230]:
1ga8a_PU5_198-230
CI=1.89


[231-254]:
1ga8a_PU5_231-254
CI=1.32


[255-271 ]:
1ga8a_PU5_255-271
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-35]:
1ga8a_PU6_1-35
CI=1.69


[36-63]:
1ga8a_PU6_36-63
CI=1.01


[64-83]:
1ga8a_PU6_64-83
CI=1.10


[84-110]:
1ga8a_PU6_84-110
CI=0.14


[111-127]:
1ga8a_PU6_111-127
CI=0.11


[128-158]:
1ga8a_PU6_128-158
CI=1.03


[159-180]:
1ga8a_PU6_159-180
CI=0.00


[181-197]:
1ga8a_PU6_181-197
CI=0.00


[198-230]:
1ga8a_PU6_198-230
CI=1.89


[231-254]:
1ga8a_PU6_231-254
CI=1.32


[255-271 ]:
1ga8a_PU6_255-271
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ga8a_PU7_1-18
CI=0.60


[19-35]:
1ga8a_PU7_19-35
CI=0.22


[36-63]:
1ga8a_PU7_36-63
CI=1.01


[64-83]:
1ga8a_PU7_64-83
CI=1.10


[84-110]:
1ga8a_PU7_84-110
CI=0.14


[111-127]:
1ga8a_PU7_111-127
CI=0.11


[128-158]:
1ga8a_PU7_128-158
CI=1.03


[159-180]:
1ga8a_PU7_159-180
CI=0.00


[181-197]:
1ga8a_PU7_181-197
CI=0.00


[198-230]:
1ga8a_PU7_198-230
CI=1.89


[231-254]:
1ga8a_PU7_231-254
CI=1.32


[255-271 ]:
1ga8a_PU7_255-271
CI=0.22


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ga8a_PU_1-18
CI=0.60


[19-35]:
1ga8a_PU_19-35
CI=0.22


[36-63]:
1ga8a_PU_36-63
CI=1.01


[64-83]:
1ga8a_PU_64-83
CI=1.10


[84-110]:
1ga8a_PU_84-110
CI=0.14


[111-127]:
1ga8a_PU_111-127
CI=0.11


[128-158]:
1ga8a_PU_128-158
CI=1.03


[159-180]:
1ga8a_PU_159-180
CI=0.00


[181-197]:
1ga8a_PU_181-197
CI=0.00


[198-214]:
1ga8a_PU_198-214
CI=0.21


[215-230]:
1ga8a_PU_215-230
CI=0.12


[231-254]:
1ga8a_PU_231-254
CI=1.32


[255-271 ]:
1ga8a_PU_255-271
CI=0.22