Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gaka_PU0_1-24
CI=0.07


[25-40]:
1gaka_PU0_25-40
CI=0.79


[41-137 ]:
1gaka_PU0_41-137
CI=1.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gaka_PU1_1-24
CI=0.07


[25-40]:
1gaka_PU1_25-40
CI=0.79


[41-61]:
1gaka_PU1_41-61
CI=0.00


[62-93]:
1gaka_PU1_62-93
CI=0.69


[94-137 ]:
1gaka_PU1_94-137
CI=0.09


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1gaka_PU_1-24
CI=0.07


[25-40]:
1gaka_PU_25-40
CI=0.79


[41-61]:
1gaka_PU_41-61
CI=0.00


[62-93]:
1gaka_PU_62-93
CI=0.69


[94-116]:
1gaka_PU_94-116
CI=0.16


[117-137 ]:
1gaka_PU_117-137
CI=0.00