Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-111]:
1gca0_PU0_1-111
CI=3.65


[112-255]:
1gca0_PU0_112-255
CI=4.56


[256-309 ]:
1gca0_PU0_256-309
CI=1.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-111]:
1gca0_PU1_1-111
CI=3.65


[112-255]:
1gca0_PU1_112-255
CI=4.56


[256-293]:
1gca0_PU1_256-293
CI=1.09


[294-309 ]:
1gca0_PU1_294-309
CI=0.23


Level 2
PU
Molecule needs Java 1.4 Structure


[1-68]:
1gca0_PU2_1-68
CI=3.40


[69-111]:
1gca0_PU2_69-111
CI=2.04


[112-255]:
1gca0_PU2_112-255
CI=4.56


[256-293]:
1gca0_PU2_256-293
CI=1.09


[294-309 ]:
1gca0_PU2_294-309
CI=0.23


Level 3
PU
Molecule needs Java 1.4 Structure


[1-68]:
1gca0_PU3_1-68
CI=3.40


[69-111]:
1gca0_PU3_69-111
CI=2.04


[112-180]:
1gca0_PU3_112-180
CI=3.01


[181-255]:
1gca0_PU3_181-255
CI=3.87


[256-293]:
1gca0_PU3_256-293
CI=1.09


[294-309 ]:
1gca0_PU3_294-309
CI=0.23


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU4_1-16
CI=0.00


[17-32]:
1gca0_PU4_17-32
CI=0.00


[33-68]:
1gca0_PU4_33-68
CI=0.88


[69-111]:
1gca0_PU4_69-111
CI=2.04


[112-180]:
1gca0_PU4_112-180
CI=3.01


[181-255]:
1gca0_PU4_181-255
CI=3.87


[256-293]:
1gca0_PU4_256-293
CI=1.09


[294-309 ]:
1gca0_PU4_294-309
CI=0.23


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU5_1-16
CI=0.00


[17-32]:
1gca0_PU5_17-32
CI=0.00


[33-68]:
1gca0_PU5_33-68
CI=0.88


[69-111]:
1gca0_PU5_69-111
CI=2.04


[112-180]:
1gca0_PU5_112-180
CI=3.01


[181-230]:
1gca0_PU5_181-230
CI=2.43


[231-255]:
1gca0_PU5_231-255
CI=2.79


[256-293]:
1gca0_PU5_256-293
CI=1.09


[294-309 ]:
1gca0_PU5_294-309
CI=0.23


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU6_1-16
CI=0.00


[17-32]:
1gca0_PU6_17-32
CI=0.00


[33-68]:
1gca0_PU6_33-68
CI=0.88


[69-111]:
1gca0_PU6_69-111
CI=2.04


[112-180]:
1gca0_PU6_112-180
CI=3.01


[181-230]:
1gca0_PU6_181-230
CI=2.43


[231-255]:
1gca0_PU6_231-255
CI=2.79


[256-277]:
1gca0_PU6_256-277
CI=0.09


[278-293]:
1gca0_PU6_278-293
CI=0.78


[294-309 ]:
1gca0_PU6_294-309
CI=0.23


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU7_1-16
CI=0.00


[17-32]:
1gca0_PU7_17-32
CI=0.00


[33-68]:
1gca0_PU7_33-68
CI=0.88


[69-111]:
1gca0_PU7_69-111
CI=2.04


[112-139]:
1gca0_PU7_112-139
CI=0.19


[140-180]:
1gca0_PU7_140-180
CI=2.57


[181-230]:
1gca0_PU7_181-230
CI=2.43


[231-255]:
1gca0_PU7_231-255
CI=2.79


[256-277]:
1gca0_PU7_256-277
CI=0.09


[278-293]:
1gca0_PU7_278-293
CI=0.78


[294-309 ]:
1gca0_PU7_294-309
CI=0.23


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU8_1-16
CI=0.00


[17-32]:
1gca0_PU8_17-32
CI=0.00


[33-68]:
1gca0_PU8_33-68
CI=0.88


[69-85]:
1gca0_PU8_69-85
CI=0.00


[86-111]:
1gca0_PU8_86-111
CI=1.76


[112-139]:
1gca0_PU8_112-139
CI=0.19


[140-180]:
1gca0_PU8_140-180
CI=2.57


[181-230]:
1gca0_PU8_181-230
CI=2.43


[231-255]:
1gca0_PU8_231-255
CI=2.79


[256-277]:
1gca0_PU8_256-277
CI=0.09


[278-293]:
1gca0_PU8_278-293
CI=0.78


[294-309 ]:
1gca0_PU8_294-309
CI=0.23


Level 9
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU9_1-16
CI=0.00


[17-32]:
1gca0_PU9_17-32
CI=0.00


[33-51]:
1gca0_PU9_33-51
CI=0.68


[52-68]:
1gca0_PU9_52-68
CI=0.10


[69-85]:
1gca0_PU9_69-85
CI=0.00


[86-111]:
1gca0_PU9_86-111
CI=1.76


[112-139]:
1gca0_PU9_112-139
CI=0.19


[140-180]:
1gca0_PU9_140-180
CI=2.57


[181-230]:
1gca0_PU9_181-230
CI=2.43


[231-255]:
1gca0_PU9_231-255
CI=2.79


[256-277]:
1gca0_PU9_256-277
CI=0.09


[278-293]:
1gca0_PU9_278-293
CI=0.78


[294-309 ]:
1gca0_PU9_294-309
CI=0.23


Level 10
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU10_1-16
CI=0.00


[17-32]:
1gca0_PU10_17-32
CI=0.00


[33-51]:
1gca0_PU10_33-51
CI=0.68


[52-68]:
1gca0_PU10_52-68
CI=0.10


[69-85]:
1gca0_PU10_69-85
CI=0.00


[86-111]:
1gca0_PU10_86-111
CI=1.76


[112-139]:
1gca0_PU10_112-139
CI=0.19


[140-180]:
1gca0_PU10_140-180
CI=2.57


[181-204]:
1gca0_PU10_181-204
CI=0.47


[205-230]:
1gca0_PU10_205-230
CI=0.71


[231-255]:
1gca0_PU10_231-255
CI=2.79


[256-277]:
1gca0_PU10_256-277
CI=0.09


[278-293]:
1gca0_PU10_278-293
CI=0.78


[294-309 ]:
1gca0_PU10_294-309
CI=0.23


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-16]:
1gca0_PU_1-16
CI=0.00


[17-32]:
1gca0_PU_17-32
CI=0.00


[33-51]:
1gca0_PU_33-51
CI=0.68


[52-68]:
1gca0_PU_52-68
CI=0.10


[69-85]:
1gca0_PU_69-85
CI=0.00


[86-111]:
1gca0_PU_86-111
CI=1.76


[112-139]:
1gca0_PU_112-139
CI=0.19


[140-160]:
1gca0_PU_140-160
CI=1.24


[161-180]:
1gca0_PU_161-180
CI=0.36


[181-204]:
1gca0_PU_181-204
CI=0.47


[205-230]:
1gca0_PU_205-230
CI=0.71


[231-255]:
1gca0_PU_231-255
CI=2.79


[256-277]:
1gca0_PU_256-277
CI=0.09


[278-293]:
1gca0_PU_278-293
CI=0.78


[294-309 ]:
1gca0_PU_294-309
CI=0.23