Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-101]:
1gd0a_PU0_1-101
CI=3.71


[102-118 ]:
1gd0a_PU0_102-118
CI=1.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gd0a_PU1_1-16
CI=0.00


[17-41]:
1gd0a_PU1_17-41
CI=1.12


[42-101]:
1gd0a_PU1_42-101
CI=2.20


[102-118 ]:
1gd0a_PU1_102-118
CI=1.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gd0a_PU2_1-16
CI=0.00


[17-41]:
1gd0a_PU2_17-41
CI=1.12


[42-62]:
1gd0a_PU2_42-62
CI=0.44


[63-101]:
1gd0a_PU2_63-101
CI=1.07


[102-118 ]:
1gd0a_PU2_102-118
CI=1.53


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1gd0a_PU_1-16
CI=0.00


[17-41]:
1gd0a_PU_17-41
CI=1.12


[42-62]:
1gd0a_PU_42-62
CI=0.44


[63-79]:
1gd0a_PU_63-79
CI=0.00


[80-101]:
1gd0a_PU_80-101
CI=0.84


[102-118 ]:
1gd0a_PU_102-118
CI=1.53