Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gd7a_PU0_1-16
CI=0.00


[17-97]:
1gd7a_PU0_17-97
CI=4.52


[98-109 ]:
1gd7a_PU0_98-109
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gd7a_PU1_1-16
CI=0.00


[17-60]:
1gd7a_PU1_17-60
CI=3.41


[61-97]:
1gd7a_PU1_61-97
CI=2.84


[98-109 ]:
1gd7a_PU1_98-109
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1gd7a_PU2_1-16
CI=0.00


[17-60]:
1gd7a_PU2_17-60
CI=3.41


[61-80]:
1gd7a_PU2_61-80
CI=1.03


[81-97]:
1gd7a_PU2_81-97
CI=1.95


[98-109 ]:
1gd7a_PU2_98-109
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1gd7a_PU_1-16
CI=0.00


[17-35]:
1gd7a_PU_17-35
CI=2.47


[36-60]:
1gd7a_PU_36-60
CI=0.23


[61-80]:
1gd7a_PU_61-80
CI=1.03


[81-97]:
1gd7a_PU_81-97
CI=1.95


[98-109 ]:
1gd7a_PU_98-109
CI=0.00