Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-86]:
1geea_PU0_1-86
CI=3.84


[87-261 ]:
1geea_PU0_87-261
CI=3.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-86]:
1geea_PU1_1-86
CI=3.84


[87-189]:
1geea_PU1_87-189
CI=3.60


[190-221]:
1geea_PU1_190-221
CI=1.60


[222-261 ]:
1geea_PU1_222-261
CI=0.27


Level 2
PU
Molecule needs Java 1.4 Structure


[1-86]:
1geea_PU2_1-86
CI=3.84


[87-189]:
1geea_PU2_87-189
CI=3.60


[190-221]:
1geea_PU2_190-221
CI=1.60


[222-245]:
1geea_PU2_222-245
CI=0.29


[246-261 ]:
1geea_PU2_246-261
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-63]:
1geea_PU3_1-63
CI=4.06


[64-86]:
1geea_PU3_64-86
CI=0.74


[87-189]:
1geea_PU3_87-189
CI=3.60


[190-221]:
1geea_PU3_190-221
CI=1.60


[222-245]:
1geea_PU3_222-245
CI=0.29


[246-261 ]:
1geea_PU3_246-261
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-63]:
1geea_PU4_1-63
CI=4.06


[64-86]:
1geea_PU4_64-86
CI=0.74


[87-121]:
1geea_PU4_87-121
CI=0.97


[122-137]:
1geea_PU4_122-137
CI=0.12


[138-189]:
1geea_PU4_138-189
CI=3.00


[190-221]:
1geea_PU4_190-221
CI=1.60


[222-245]:
1geea_PU4_222-245
CI=0.29


[246-261 ]:
1geea_PU4_246-261
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-63]:
1geea_PU5_1-63
CI=4.06


[64-86]:
1geea_PU5_64-86
CI=0.74


[87-121]:
1geea_PU5_87-121
CI=0.97


[122-137]:
1geea_PU5_122-137
CI=0.12


[138-166]:
1geea_PU5_138-166
CI=1.50


[167-189]:
1geea_PU5_167-189
CI=1.14


[190-221]:
1geea_PU5_190-221
CI=1.60


[222-245]:
1geea_PU5_222-245
CI=0.29


[246-261 ]:
1geea_PU5_246-261
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-37]:
1geea_PU6_1-37
CI=3.04


[38-63]:
1geea_PU6_38-63
CI=1.30


[64-86]:
1geea_PU6_64-86
CI=0.74


[87-121]:
1geea_PU6_87-121
CI=0.97


[122-137]:
1geea_PU6_122-137
CI=0.12


[138-166]:
1geea_PU6_138-166
CI=1.50


[167-189]:
1geea_PU6_167-189
CI=1.14


[190-221]:
1geea_PU6_190-221
CI=1.60


[222-245]:
1geea_PU6_222-245
CI=0.29


[246-261 ]:
1geea_PU6_246-261
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-37]:
1geea_PU7_1-37
CI=3.04


[38-63]:
1geea_PU7_38-63
CI=1.30


[64-86]:
1geea_PU7_64-86
CI=0.74


[87-104]:
1geea_PU7_87-104
CI=0.00


[105-121]:
1geea_PU7_105-121
CI=0.00


[122-137]:
1geea_PU7_122-137
CI=0.12


[138-166]:
1geea_PU7_138-166
CI=1.50


[167-189]:
1geea_PU7_167-189
CI=1.14


[190-221]:
1geea_PU7_190-221
CI=1.60


[222-245]:
1geea_PU7_222-245
CI=0.29


[246-261 ]:
1geea_PU7_246-261
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-21]:
1geea_PU_1-21
CI=0.53


[22-37]:
1geea_PU_22-37
CI=0.45


[38-63]:
1geea_PU_38-63
CI=1.30


[64-86]:
1geea_PU_64-86
CI=0.74


[87-104]:
1geea_PU_87-104
CI=0.00


[105-121]:
1geea_PU_105-121
CI=0.00


[122-137]:
1geea_PU_122-137
CI=0.12


[138-166]:
1geea_PU_138-166
CI=1.50


[167-189]:
1geea_PU_167-189
CI=1.14


[190-221]:
1geea_PU_190-221
CI=1.60


[222-245]:
1geea_PU_222-245
CI=0.29


[246-261 ]:
1geea_PU_246-261
CI=0.00