Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-120]:
1ghea_PU0_1-120
CI=3.53


[121-166 ]:
1ghea_PU0_121-166
CI=3.63


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ghea_PU1_1-18
CI=0.00


[19-47]:
1ghea_PU1_19-47
CI=1.42


[48-120]:
1ghea_PU1_48-120
CI=3.40


[121-166 ]:
1ghea_PU1_121-166
CI=3.63


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ghea_PU2_1-18
CI=0.00


[19-47]:
1ghea_PU2_19-47
CI=1.42


[48-91]:
1ghea_PU2_48-91
CI=3.26


[92-120]:
1ghea_PU2_92-120
CI=0.32


[121-166 ]:
1ghea_PU2_121-166
CI=3.63


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ghea_PU3_1-18
CI=0.00


[19-47]:
1ghea_PU3_19-47
CI=1.42


[48-71]:
1ghea_PU3_48-71
CI=1.34


[72-91]:
1ghea_PU3_72-91
CI=2.62


[92-120]:
1ghea_PU3_92-120
CI=0.32


[121-166 ]:
1ghea_PU3_121-166
CI=3.63


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ghea_PU_1-18
CI=0.00


[19-47]:
1ghea_PU_19-47
CI=1.42


[48-71]:
1ghea_PU_48-71
CI=1.34


[72-91]:
1ghea_PU_72-91
CI=2.62


[92-120]:
1ghea_PU_92-120
CI=0.32


[121-139]:
1ghea_PU_121-139
CI=0.48


[140-166 ]:
1ghea_PU_140-166
CI=2.96