Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU0_1-18
CI=0.00


[19-174]:
1gkla_PU0_19-174
CI=4.59


[175-283 ]:
1gkla_PU0_175-283
CI=3.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU1_1-18
CI=0.00


[19-174]:
1gkla_PU1_19-174
CI=4.59


[175-267]:
1gkla_PU1_175-267
CI=3.50


[268-283 ]:
1gkla_PU1_268-283
CI=0.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU2_1-18
CI=0.00


[19-107]:
1gkla_PU2_19-107
CI=3.66


[108-174]:
1gkla_PU2_108-174
CI=3.20


[175-267]:
1gkla_PU2_175-267
CI=3.50


[268-283 ]:
1gkla_PU2_268-283
CI=0.22


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU3_1-18
CI=0.00


[19-107]:
1gkla_PU3_19-107
CI=3.66


[108-141]:
1gkla_PU3_108-141
CI=1.10


[142-174]:
1gkla_PU3_142-174
CI=3.44


[175-267]:
1gkla_PU3_175-267
CI=3.50


[268-283 ]:
1gkla_PU3_268-283
CI=0.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU4_1-18
CI=0.00


[19-107]:
1gkla_PU4_19-107
CI=3.66


[108-141]:
1gkla_PU4_108-141
CI=1.10


[142-174]:
1gkla_PU4_142-174
CI=3.44


[175-250]:
1gkla_PU4_175-250
CI=3.08


[251-267]:
1gkla_PU4_251-267
CI=0.32


[268-283 ]:
1gkla_PU4_268-283
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU5_1-18
CI=0.00


[19-107]:
1gkla_PU5_19-107
CI=3.66


[108-125]:
1gkla_PU5_108-125
CI=0.00


[126-141]:
1gkla_PU5_126-141
CI=0.92


[142-174]:
1gkla_PU5_142-174
CI=3.44


[175-250]:
1gkla_PU5_175-250
CI=3.08


[251-267]:
1gkla_PU5_251-267
CI=0.32


[268-283 ]:
1gkla_PU5_268-283
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU6_1-18
CI=0.00


[19-107]:
1gkla_PU6_19-107
CI=3.66


[108-125]:
1gkla_PU6_108-125
CI=0.00


[126-141]:
1gkla_PU6_126-141
CI=0.92


[142-174]:
1gkla_PU6_142-174
CI=3.44


[175-202]:
1gkla_PU6_175-202
CI=0.60


[203-250]:
1gkla_PU6_203-250
CI=2.70


[251-267]:
1gkla_PU6_251-267
CI=0.32


[268-283 ]:
1gkla_PU6_268-283
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU7_1-18
CI=0.00


[19-61]:
1gkla_PU7_19-61
CI=1.88


[62-78]:
1gkla_PU7_62-78
CI=0.77


[79-107]:
1gkla_PU7_79-107
CI=0.51


[108-125]:
1gkla_PU7_108-125
CI=0.00


[126-141]:
1gkla_PU7_126-141
CI=0.92


[142-174]:
1gkla_PU7_142-174
CI=3.44


[175-202]:
1gkla_PU7_175-202
CI=0.60


[203-250]:
1gkla_PU7_203-250
CI=2.70


[251-267]:
1gkla_PU7_251-267
CI=0.32


[268-283 ]:
1gkla_PU7_268-283
CI=0.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU8_1-18
CI=0.00


[19-45]:
1gkla_PU8_19-45
CI=2.12


[46-61]:
1gkla_PU8_46-61
CI=0.00


[62-78]:
1gkla_PU8_62-78
CI=0.77


[79-107]:
1gkla_PU8_79-107
CI=0.51


[108-125]:
1gkla_PU8_108-125
CI=0.00


[126-141]:
1gkla_PU8_126-141
CI=0.92


[142-174]:
1gkla_PU8_142-174
CI=3.44


[175-202]:
1gkla_PU8_175-202
CI=0.60


[203-250]:
1gkla_PU8_203-250
CI=2.70


[251-267]:
1gkla_PU8_251-267
CI=0.32


[268-283 ]:
1gkla_PU8_268-283
CI=0.22


Level 9
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU9_1-18
CI=0.00


[19-45]:
1gkla_PU9_19-45
CI=2.12


[46-61]:
1gkla_PU9_46-61
CI=0.00


[62-78]:
1gkla_PU9_62-78
CI=0.77


[79-107]:
1gkla_PU9_79-107
CI=0.51


[108-125]:
1gkla_PU9_108-125
CI=0.00


[126-141]:
1gkla_PU9_126-141
CI=0.92


[142-174]:
1gkla_PU9_142-174
CI=3.44


[175-202]:
1gkla_PU9_175-202
CI=0.60


[203-225]:
1gkla_PU9_203-225
CI=0.24


[226-250]:
1gkla_PU9_226-250
CI=1.95


[251-267]:
1gkla_PU9_251-267
CI=0.32


[268-283 ]:
1gkla_PU9_268-283
CI=0.22


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-18]:
1gkla_PU_1-18
CI=0.00


[19-45]:
1gkla_PU_19-45
CI=2.12


[46-61]:
1gkla_PU_46-61
CI=0.00


[62-78]:
1gkla_PU_62-78
CI=0.77


[79-107]:
1gkla_PU_79-107
CI=0.51


[108-125]:
1gkla_PU_108-125
CI=0.00


[126-141]:
1gkla_PU_126-141
CI=0.92


[142-158]:
1gkla_PU_142-158
CI=1.08


[159-174]:
1gkla_PU_159-174
CI=0.66


[175-202]:
1gkla_PU_175-202
CI=0.60


[203-225]:
1gkla_PU_203-225
CI=0.24


[226-250]:
1gkla_PU_226-250
CI=1.95


[251-267]:
1gkla_PU_251-267
CI=0.32


[268-283 ]:
1gkla_PU_268-283
CI=0.22