Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU0_1-40
CI=3.50


[41-273 ]:
1gl4a_PU0_41-273
CI=5.66


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU1_1-40
CI=3.50


[41-171]:
1gl4a_PU1_41-171
CI=4.66


[172-244]:
1gl4a_PU1_172-244
CI=3.24


[245-273 ]:
1gl4a_PU1_245-273
CI=2.62


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU2_1-40
CI=3.50


[41-171]:
1gl4a_PU2_41-171
CI=4.66


[172-228]:
1gl4a_PU2_172-228
CI=3.49


[229-244]:
1gl4a_PU2_229-244
CI=0.00


[245-273 ]:
1gl4a_PU2_245-273
CI=2.62


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU3_1-40
CI=3.50


[41-71]:
1gl4a_PU3_41-71
CI=2.70


[72-125]:
1gl4a_PU3_72-125
CI=2.20


[126-171]:
1gl4a_PU3_126-171
CI=3.67


[172-228]:
1gl4a_PU3_172-228
CI=3.49


[229-244]:
1gl4a_PU3_229-244
CI=0.00


[245-273 ]:
1gl4a_PU3_245-273
CI=2.62


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU4_1-40
CI=3.50


[41-71]:
1gl4a_PU4_41-71
CI=2.70


[72-108]:
1gl4a_PU4_72-108
CI=1.23


[109-125]:
1gl4a_PU4_109-125
CI=1.41


[126-171]:
1gl4a_PU4_126-171
CI=3.67


[172-228]:
1gl4a_PU4_172-228
CI=3.49


[229-244]:
1gl4a_PU4_229-244
CI=0.00


[245-273 ]:
1gl4a_PU4_245-273
CI=2.62


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU5_1-40
CI=3.50


[41-71]:
1gl4a_PU5_41-71
CI=2.70


[72-88]:
1gl4a_PU5_72-88
CI=1.21


[89-108]:
1gl4a_PU5_89-108
CI=0.00


[109-125]:
1gl4a_PU5_109-125
CI=1.41


[126-171]:
1gl4a_PU5_126-171
CI=3.67


[172-228]:
1gl4a_PU5_172-228
CI=3.49


[229-244]:
1gl4a_PU5_229-244
CI=0.00


[245-273 ]:
1gl4a_PU5_245-273
CI=2.62


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU6_1-40
CI=3.50


[41-71]:
1gl4a_PU6_41-71
CI=2.70


[72-88]:
1gl4a_PU6_72-88
CI=1.21


[89-108]:
1gl4a_PU6_89-108
CI=0.00


[109-125]:
1gl4a_PU6_109-125
CI=1.41


[126-171]:
1gl4a_PU6_126-171
CI=3.67


[172-195]:
1gl4a_PU6_172-195
CI=0.71


[196-228]:
1gl4a_PU6_196-228
CI=2.37


[229-244]:
1gl4a_PU6_229-244
CI=0.00


[245-273 ]:
1gl4a_PU6_245-273
CI=2.62


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gl4a_PU7_1-40
CI=3.50


[41-71]:
1gl4a_PU7_41-71
CI=2.70


[72-88]:
1gl4a_PU7_72-88
CI=1.21


[89-108]:
1gl4a_PU7_89-108
CI=0.00


[109-125]:
1gl4a_PU7_109-125
CI=1.41


[126-149]:
1gl4a_PU7_126-149
CI=2.68


[150-171]:
1gl4a_PU7_150-171
CI=0.68


[172-195]:
1gl4a_PU7_172-195
CI=0.71


[196-228]:
1gl4a_PU7_196-228
CI=2.37


[229-244]:
1gl4a_PU7_229-244
CI=0.00


[245-273 ]:
1gl4a_PU7_245-273
CI=2.62


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gl4a_PU8_1-20
CI=0.65


[21-40]:
1gl4a_PU8_21-40
CI=2.16


[41-71]:
1gl4a_PU8_41-71
CI=2.70


[72-88]:
1gl4a_PU8_72-88
CI=1.21


[89-108]:
1gl4a_PU8_89-108
CI=0.00


[109-125]:
1gl4a_PU8_109-125
CI=1.41


[126-149]:
1gl4a_PU8_126-149
CI=2.68


[150-171]:
1gl4a_PU8_150-171
CI=0.68


[172-195]:
1gl4a_PU8_172-195
CI=0.71


[196-228]:
1gl4a_PU8_196-228
CI=2.37


[229-244]:
1gl4a_PU8_229-244
CI=0.00


[245-273 ]:
1gl4a_PU8_245-273
CI=2.62


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-20]:
1gl4a_PU_1-20
CI=0.65


[21-40]:
1gl4a_PU_21-40
CI=2.16


[41-71]:
1gl4a_PU_41-71
CI=2.70


[72-88]:
1gl4a_PU_72-88
CI=1.21


[89-108]:
1gl4a_PU_89-108
CI=0.00


[109-125]:
1gl4a_PU_109-125
CI=1.41


[126-149]:
1gl4a_PU_126-149
CI=2.68


[150-171]:
1gl4a_PU_150-171
CI=0.68


[172-195]:
1gl4a_PU_172-195
CI=0.71


[196-212]:
1gl4a_PU_196-212
CI=0.33


[213-228]:
1gl4a_PU_213-228
CI=0.00


[229-244]:
1gl4a_PU_229-244
CI=0.00


[245-273 ]:
1gl4a_PU_245-273
CI=2.62