Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gmia_PU0_1-19
CI=0.00


[20-35]:
1gmia_PU0_20-35
CI=0.23


[36-135 ]:
1gmia_PU0_36-135
CI=4.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gmia_PU1_1-19
CI=0.00


[20-35]:
1gmia_PU1_20-35
CI=0.23


[36-100]:
1gmia_PU1_36-100
CI=4.30


[101-135 ]:
1gmia_PU1_101-135
CI=2.07


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gmia_PU2_1-19
CI=0.00


[20-35]:
1gmia_PU2_20-35
CI=0.23


[36-59]:
1gmia_PU2_36-59
CI=3.06


[60-76]:
1gmia_PU2_60-76
CI=0.00


[77-100]:
1gmia_PU2_77-100
CI=2.84


[101-135 ]:
1gmia_PU2_101-135
CI=2.07


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gmia_PU_1-19
CI=0.00


[20-35]:
1gmia_PU_20-35
CI=0.23


[36-59]:
1gmia_PU_36-59
CI=3.06


[60-76]:
1gmia_PU_60-76
CI=0.00


[77-100]:
1gmia_PU_77-100
CI=2.84


[101-117]:
1gmia_PU_101-117
CI=0.32


[118-135 ]:
1gmia_PU_118-135
CI=0.10