Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-69]:
1gmua_PU0_1-69
CI=4.60


[70-138 ]:
1gmua_PU0_70-138
CI=3.15


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmua_PU1_1-20
CI=0.00


[21-50]:
1gmua_PU1_21-50
CI=2.47


[51-69]:
1gmua_PU1_51-69
CI=2.56


[70-138 ]:
1gmua_PU1_70-138
CI=3.15


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmua_PU2_1-20
CI=0.00


[21-50]:
1gmua_PU2_21-50
CI=2.47


[51-69]:
1gmua_PU2_51-69
CI=2.56


[70-85]:
1gmua_PU2_70-85
CI=0.12


[86-101]:
1gmua_PU2_86-101
CI=0.56


[102-138 ]:
1gmua_PU2_102-138
CI=0.45


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmua_PU_1-20
CI=0.00


[21-50]:
1gmua_PU_21-50
CI=2.47


[51-69]:
1gmua_PU_51-69
CI=2.56


[70-85]:
1gmua_PU_70-85
CI=0.12


[86-101]:
1gmua_PU_86-101
CI=0.56


[102-122]:
1gmua_PU_102-122
CI=0.00


[123-138 ]:
1gmua_PU_123-138
CI=0.00