Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-53]:
1gmya_PU0_1-53
CI=2.22


[54-152]:
1gmya_PU0_54-152
CI=3.82


[153-254 ]:
1gmya_PU0_153-254
CI=4.44


Level 1
PU
Molecule needs Java 1.4 Structure


[1-53]:
1gmya_PU1_1-53
CI=2.22


[54-107]:
1gmya_PU1_54-107
CI=3.28


[108-123]:
1gmya_PU1_108-123
CI=1.73


[124-152]:
1gmya_PU1_124-152
CI=0.52


[153-254 ]:
1gmya_PU1_153-254
CI=4.44


Level 2
PU
Molecule needs Java 1.4 Structure


[1-53]:
1gmya_PU2_1-53
CI=2.22


[54-90]:
1gmya_PU2_54-90
CI=1.58


[91-107]:
1gmya_PU2_91-107
CI=3.28


[108-123]:
1gmya_PU2_108-123
CI=1.73


[124-152]:
1gmya_PU2_124-152
CI=0.52


[153-254 ]:
1gmya_PU2_153-254
CI=4.44


Level 3
PU
Molecule needs Java 1.4 Structure


[1-53]:
1gmya_PU3_1-53
CI=2.22


[54-90]:
1gmya_PU3_54-90
CI=1.58


[91-107]:
1gmya_PU3_91-107
CI=3.28


[108-123]:
1gmya_PU3_108-123
CI=1.73


[124-152]:
1gmya_PU3_124-152
CI=0.52


[153-169]:
1gmya_PU3_153-169
CI=0.54


[170-243]:
1gmya_PU3_170-243
CI=4.39


[244-254 ]:
1gmya_PU3_244-254
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmya_PU4_1-20
CI=0.56


[21-53]:
1gmya_PU4_21-53
CI=1.14


[54-90]:
1gmya_PU4_54-90
CI=1.58


[91-107]:
1gmya_PU4_91-107
CI=3.28


[108-123]:
1gmya_PU4_108-123
CI=1.73


[124-152]:
1gmya_PU4_124-152
CI=0.52


[153-169]:
1gmya_PU4_153-169
CI=0.54


[170-243]:
1gmya_PU4_170-243
CI=4.39


[244-254 ]:
1gmya_PU4_244-254
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmya_PU5_1-20
CI=0.56


[21-37]:
1gmya_PU5_21-37
CI=0.64


[38-53]:
1gmya_PU5_38-53
CI=1.49


[54-90]:
1gmya_PU5_54-90
CI=1.58


[91-107]:
1gmya_PU5_91-107
CI=3.28


[108-123]:
1gmya_PU5_108-123
CI=1.73


[124-152]:
1gmya_PU5_124-152
CI=0.52


[153-169]:
1gmya_PU5_153-169
CI=0.54


[170-243]:
1gmya_PU5_170-243
CI=4.39


[244-254 ]:
1gmya_PU5_244-254
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmya_PU6_1-20
CI=0.56


[21-37]:
1gmya_PU6_21-37
CI=0.64


[38-53]:
1gmya_PU6_38-53
CI=1.49


[54-90]:
1gmya_PU6_54-90
CI=1.58


[91-107]:
1gmya_PU6_91-107
CI=3.28


[108-123]:
1gmya_PU6_108-123
CI=1.73


[124-152]:
1gmya_PU6_124-152
CI=0.52


[153-169]:
1gmya_PU6_153-169
CI=0.54


[170-201]:
1gmya_PU6_170-201
CI=2.20


[202-234]:
1gmya_PU6_202-234
CI=3.24


[235-243]:
1gmya_PU6_235-243
CI=0.18


[244-254 ]:
1gmya_PU6_244-254
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmya_PU7_1-20
CI=0.56


[21-37]:
1gmya_PU7_21-37
CI=0.64


[38-53]:
1gmya_PU7_38-53
CI=1.49


[54-90]:
1gmya_PU7_54-90
CI=1.58


[91-107]:
1gmya_PU7_91-107
CI=3.28


[108-123]:
1gmya_PU7_108-123
CI=1.73


[124-152]:
1gmya_PU7_124-152
CI=0.52


[153-169]:
1gmya_PU7_153-169
CI=0.54


[170-201]:
1gmya_PU7_170-201
CI=2.20


[202-218]:
1gmya_PU7_202-218
CI=2.08


[219-234]:
1gmya_PU7_219-234
CI=1.62


[235-243]:
1gmya_PU7_235-243
CI=0.18


[244-254 ]:
1gmya_PU7_244-254
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmya_PU_1-20
CI=0.56


[21-37]:
1gmya_PU_21-37
CI=0.64


[38-53]:
1gmya_PU_38-53
CI=1.49


[54-74]:
1gmya_PU_54-74
CI=0.27


[75-90]:
1gmya_PU_75-90
CI=0.23


[91-107]:
1gmya_PU_91-107
CI=3.28


[108-123]:
1gmya_PU_108-123
CI=1.73


[124-152]:
1gmya_PU_124-152
CI=0.52


[153-169]:
1gmya_PU_153-169
CI=0.54


[170-201]:
1gmya_PU_170-201
CI=2.20


[202-218]:
1gmya_PU_202-218
CI=2.08


[219-234]:
1gmya_PU_219-234
CI=1.62


[235-243]:
1gmya_PU_235-243
CI=0.18


[244-254 ]:
1gmya_PU_244-254
CI=0.00