Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1gnua_PU0_1-26
CI=0.14


[27-117 ]:
1gnua_PU0_27-117
CI=3.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1gnua_PU1_1-26
CI=0.14


[27-57]:
1gnua_PU1_27-57
CI=2.09


[58-75]:
1gnua_PU1_58-75
CI=0.30


[76-117 ]:
1gnua_PU1_76-117
CI=2.22


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1gnua_PU_1-26
CI=0.14


[27-57]:
1gnua_PU_27-57
CI=2.09


[58-75]:
1gnua_PU_58-75
CI=0.30


[76-98]:
1gnua_PU_76-98
CI=0.57


[99-117 ]:
1gnua_PU_99-117
CI=0.29