Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1gnya_PU0_1-48
CI=3.59


[49-140]:
1gnya_PU0_49-140
CI=4.68


[141-153 ]:
1gnya_PU0_141-153
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-48]:
1gnya_PU1_1-48
CI=3.59


[49-73]:
1gnya_PU1_49-73
CI=0.00


[74-100]:
1gnya_PU1_74-100
CI=2.24


[101-140]:
1gnya_PU1_101-140
CI=0.14


[141-153 ]:
1gnya_PU1_141-153
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-48]:
1gnya_PU2_1-48
CI=3.59


[49-73]:
1gnya_PU2_49-73
CI=0.00


[74-100]:
1gnya_PU2_74-100
CI=2.24


[101-124]:
1gnya_PU2_101-124
CI=0.00


[125-140]:
1gnya_PU2_125-140
CI=0.22


[141-153 ]:
1gnya_PU2_141-153
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1gnya_PU_1-17
CI=0.00


[18-48]:
1gnya_PU_18-48
CI=2.80


[49-73]:
1gnya_PU_49-73
CI=0.00


[74-100]:
1gnya_PU_74-100
CI=2.24


[101-124]:
1gnya_PU_101-124
CI=0.00


[125-140]:
1gnya_PU_125-140
CI=0.22


[141-153 ]:
1gnya_PU_141-153
CI=0.00