Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-78]:
1go3e_PU0_1-78
CI=4.22


[79-177 ]:
1go3e_PU0_79-177
CI=4.37


Level 1
PU
Molecule needs Java 1.4 Structure


[1-78]:
1go3e_PU1_1-78
CI=4.22


[79-113]:
1go3e_PU1_79-113
CI=2.67


[114-134]:
1go3e_PU1_114-134
CI=2.59


[135-177 ]:
1go3e_PU1_135-177
CI=1.96


Level 2
PU
Molecule needs Java 1.4 Structure


[1-78]:
1go3e_PU2_1-78
CI=4.22


[79-113]:
1go3e_PU2_79-113
CI=2.67


[114-134]:
1go3e_PU2_114-134
CI=2.59


[135-160]:
1go3e_PU2_135-160
CI=1.81


[161-177 ]:
1go3e_PU2_161-177
CI=0.22


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-30]:
1go3e_PU_1-30
CI=0.37


[31-47]:
1go3e_PU_31-47
CI=1.63


[48-78]:
1go3e_PU_48-78
CI=2.70


[79-113]:
1go3e_PU_79-113
CI=2.67


[114-134]:
1go3e_PU_114-134
CI=2.59


[135-160]:
1go3e_PU_135-160
CI=1.81


[161-177 ]:
1go3e_PU_161-177
CI=0.22