Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-307]:
1gp6a_PU0_1-307
CI=4.17


[308-349 ]:
1gp6a_PU0_308-349
CI=1.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-85]:
1gp6a_PU1_1-85
CI=1.04


[86-174]:
1gp6a_PU1_86-174
CI=1.93


[175-307]:
1gp6a_PU1_175-307
CI=4.49


[308-349 ]:
1gp6a_PU1_308-349
CI=1.72


Level 2
PU
Molecule needs Java 1.4 Structure


[1-43]:
1gp6a_PU2_1-43
CI=0.00


[44-85]:
1gp6a_PU2_44-85
CI=2.09


[86-174]:
1gp6a_PU2_86-174
CI=1.93


[175-307]:
1gp6a_PU2_175-307
CI=4.49


[308-349 ]:
1gp6a_PU2_308-349
CI=1.72


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gp6a_PU3_1-22
CI=0.00


[23-43]:
1gp6a_PU3_23-43
CI=0.00


[44-85]:
1gp6a_PU3_44-85
CI=2.09


[86-174]:
1gp6a_PU3_86-174
CI=1.93


[175-307]:
1gp6a_PU3_175-307
CI=4.49


[308-349 ]:
1gp6a_PU3_308-349
CI=1.72


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gp6a_PU4_1-22
CI=0.00


[23-43]:
1gp6a_PU4_23-43
CI=0.00


[44-85]:
1gp6a_PU4_44-85
CI=2.09


[86-104]:
1gp6a_PU4_86-104
CI=0.00


[105-157]:
1gp6a_PU4_105-157
CI=1.99


[158-174]:
1gp6a_PU4_158-174
CI=0.22


[175-307]:
1gp6a_PU4_175-307
CI=4.49


[308-349 ]:
1gp6a_PU4_308-349
CI=1.72


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gp6a_PU5_1-22
CI=0.00


[23-43]:
1gp6a_PU5_23-43
CI=0.00


[44-85]:
1gp6a_PU5_44-85
CI=2.09


[86-104]:
1gp6a_PU5_86-104
CI=0.00


[105-157]:
1gp6a_PU5_105-157
CI=1.99


[158-174]:
1gp6a_PU5_158-174
CI=0.22


[175-206]:
1gp6a_PU5_175-206
CI=1.63


[207-307]:
1gp6a_PU5_207-307
CI=5.01


[308-349 ]:
1gp6a_PU5_308-349
CI=1.72


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gp6a_PU6_1-22
CI=0.00


[23-43]:
1gp6a_PU6_23-43
CI=0.00


[44-85]:
1gp6a_PU6_44-85
CI=2.09


[86-104]:
1gp6a_PU6_86-104
CI=0.00


[105-157]:
1gp6a_PU6_105-157
CI=1.99


[158-174]:
1gp6a_PU6_158-174
CI=0.22


[175-206]:
1gp6a_PU6_175-206
CI=1.63


[207-307]:
1gp6a_PU6_207-307
CI=5.01


[308-333]:
1gp6a_PU6_308-333
CI=2.25


[334-349 ]:
1gp6a_PU6_334-349
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gp6a_PU7_1-22
CI=0.00


[23-43]:
1gp6a_PU7_23-43
CI=0.00


[44-85]:
1gp6a_PU7_44-85
CI=2.09


[86-104]:
1gp6a_PU7_86-104
CI=0.00


[105-125]:
1gp6a_PU7_105-125
CI=1.34


[126-157]:
1gp6a_PU7_126-157
CI=0.94


[158-174]:
1gp6a_PU7_158-174
CI=0.22


[175-206]:
1gp6a_PU7_175-206
CI=1.63


[207-307]:
1gp6a_PU7_207-307
CI=5.01


[308-333]:
1gp6a_PU7_308-333
CI=2.25


[334-349 ]:
1gp6a_PU7_334-349
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gp6a_PU8_1-22
CI=0.00


[23-43]:
1gp6a_PU8_23-43
CI=0.00


[44-85]:
1gp6a_PU8_44-85
CI=2.09


[86-104]:
1gp6a_PU8_86-104
CI=0.00


[105-125]:
1gp6a_PU8_105-125
CI=1.34


[126-157]:
1gp6a_PU8_126-157
CI=0.94


[158-174]:
1gp6a_PU8_158-174
CI=0.22


[175-206]:
1gp6a_PU8_175-206
CI=1.63


[207-226]:
1gp6a_PU8_207-226
CI=0.09


[227-289]:
1gp6a_PU8_227-289
CI=3.77


[290-307]:
1gp6a_PU8_290-307
CI=0.10


[308-333]:
1gp6a_PU8_308-333
CI=2.25


[334-349 ]:
1gp6a_PU8_334-349
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1gp6a_PU_1-22
CI=0.00


[23-43]:
1gp6a_PU_23-43
CI=0.00


[44-85]:
1gp6a_PU_44-85
CI=2.09


[86-104]:
1gp6a_PU_86-104
CI=0.00


[105-125]:
1gp6a_PU_105-125
CI=1.34


[126-157]:
1gp6a_PU_126-157
CI=0.94


[158-174]:
1gp6a_PU_158-174
CI=0.22


[175-206]:
1gp6a_PU_175-206
CI=1.63


[207-226]:
1gp6a_PU_207-226
CI=0.09


[227-242]:
1gp6a_PU_227-242
CI=0.00


[243-264]:
1gp6a_PU_243-264
CI=1.78


[265-289]:
1gp6a_PU_265-289
CI=1.42


[290-307]:
1gp6a_PU_290-307
CI=0.10


[308-333]:
1gp6a_PU_308-333
CI=2.25


[334-349 ]:
1gp6a_PU_334-349
CI=0.00