Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1gpqa_PU0_1-34
CI=1.17


[35-127 ]:
1gpqa_PU0_35-127
CI=4.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1gpqa_PU1_1-34
CI=1.17


[35-97]:
1gpqa_PU1_35-97
CI=4.35


[98-127 ]:
1gpqa_PU1_98-127
CI=0.43


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1gpqa_PU2_1-34
CI=1.17


[35-75]:
1gpqa_PU2_35-75
CI=3.55


[76-97]:
1gpqa_PU2_76-97
CI=2.41


[98-127 ]:
1gpqa_PU2_98-127
CI=0.43


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-34]:
1gpqa_PU_1-34
CI=1.17


[35-55]:
1gpqa_PU_35-55
CI=2.49


[56-75]:
1gpqa_PU_56-75
CI=0.83


[76-97]:
1gpqa_PU_76-97
CI=2.41


[98-127 ]:
1gpqa_PU_98-127
CI=0.43