Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-127]:
1gq6a_PU0_1-127
CI=3.96


[128-214]:
1gq6a_PU0_128-214
CI=3.42


[215-295 ]:
1gq6a_PU0_215-295
CI=3.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-54]:
1gq6a_PU1_1-54
CI=1.95


[55-70]:
1gq6a_PU1_55-70
CI=0.93


[71-127]:
1gq6a_PU1_71-127
CI=1.30


[128-214]:
1gq6a_PU1_128-214
CI=3.42


[215-295 ]:
1gq6a_PU1_215-295
CI=3.69


Level 2
PU
Molecule needs Java 1.4 Structure


[1-54]:
1gq6a_PU2_1-54
CI=1.95


[55-70]:
1gq6a_PU2_55-70
CI=0.93


[71-127]:
1gq6a_PU2_71-127
CI=1.30


[128-192]:
1gq6a_PU2_128-192
CI=3.82


[193-214]:
1gq6a_PU2_193-214
CI=0.17


[215-295 ]:
1gq6a_PU2_215-295
CI=3.69


Level 3
PU
Molecule needs Java 1.4 Structure


[1-54]:
1gq6a_PU3_1-54
CI=1.95


[55-70]:
1gq6a_PU3_55-70
CI=0.93


[71-91]:
1gq6a_PU3_71-91
CI=0.78


[92-127]:
1gq6a_PU3_92-127
CI=1.15


[128-192]:
1gq6a_PU3_128-192
CI=3.82


[193-214]:
1gq6a_PU3_193-214
CI=0.17


[215-295 ]:
1gq6a_PU3_215-295
CI=3.69


Level 4
PU
Molecule needs Java 1.4 Structure


[1-28]:
1gq6a_PU4_1-28
CI=0.39


[29-54]:
1gq6a_PU4_29-54
CI=1.38


[55-70]:
1gq6a_PU4_55-70
CI=0.93


[71-91]:
1gq6a_PU4_71-91
CI=0.78


[92-127]:
1gq6a_PU4_92-127
CI=1.15


[128-192]:
1gq6a_PU4_128-192
CI=3.82


[193-214]:
1gq6a_PU4_193-214
CI=0.17


[215-295 ]:
1gq6a_PU4_215-295
CI=3.69


Level 5
PU
Molecule needs Java 1.4 Structure


[1-28]:
1gq6a_PU5_1-28
CI=0.39


[29-54]:
1gq6a_PU5_29-54
CI=1.38


[55-70]:
1gq6a_PU5_55-70
CI=0.93


[71-91]:
1gq6a_PU5_71-91
CI=0.78


[92-127]:
1gq6a_PU5_92-127
CI=1.15


[128-143]:
1gq6a_PU5_128-143
CI=0.00


[144-165]:
1gq6a_PU5_144-165
CI=0.58


[166-192]:
1gq6a_PU5_166-192
CI=2.73


[193-214]:
1gq6a_PU5_193-214
CI=0.17


[215-295 ]:
1gq6a_PU5_215-295
CI=3.69


Level 6
PU
Molecule needs Java 1.4 Structure


[1-28]:
1gq6a_PU6_1-28
CI=0.39


[29-54]:
1gq6a_PU6_29-54
CI=1.38


[55-70]:
1gq6a_PU6_55-70
CI=0.93


[71-91]:
1gq6a_PU6_71-91
CI=0.78


[92-109]:
1gq6a_PU6_92-109
CI=0.10


[110-127]:
1gq6a_PU6_110-127
CI=0.00


[128-143]:
1gq6a_PU6_128-143
CI=0.00


[144-165]:
1gq6a_PU6_144-165
CI=0.58


[166-192]:
1gq6a_PU6_166-192
CI=2.73


[193-214]:
1gq6a_PU6_193-214
CI=0.17


[215-295 ]:
1gq6a_PU6_215-295
CI=3.69


Level 7
PU
Molecule needs Java 1.4 Structure


[1-28]:
1gq6a_PU7_1-28
CI=0.39


[29-54]:
1gq6a_PU7_29-54
CI=1.38


[55-70]:
1gq6a_PU7_55-70
CI=0.93


[71-91]:
1gq6a_PU7_71-91
CI=0.78


[92-109]:
1gq6a_PU7_92-109
CI=0.10


[110-127]:
1gq6a_PU7_110-127
CI=0.00


[128-143]:
1gq6a_PU7_128-143
CI=0.00


[144-165]:
1gq6a_PU7_144-165
CI=0.58


[166-192]:
1gq6a_PU7_166-192
CI=2.73


[193-214]:
1gq6a_PU7_193-214
CI=0.17


[215-240]:
1gq6a_PU7_215-240
CI=1.66


[241-256]:
1gq6a_PU7_241-256
CI=0.00


[257-295 ]:
1gq6a_PU7_257-295
CI=1.15


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-28]:
1gq6a_PU_1-28
CI=0.39


[29-54]:
1gq6a_PU_29-54
CI=1.38


[55-70]:
1gq6a_PU_55-70
CI=0.93


[71-91]:
1gq6a_PU_71-91
CI=0.78


[92-109]:
1gq6a_PU_92-109
CI=0.10


[110-127]:
1gq6a_PU_110-127
CI=0.00


[128-143]:
1gq6a_PU_128-143
CI=0.00


[144-165]:
1gq6a_PU_144-165
CI=0.58


[166-192]:
1gq6a_PU_166-192
CI=2.73


[193-214]:
1gq6a_PU_193-214
CI=0.17


[215-240]:
1gq6a_PU_215-240
CI=1.66


[241-256]:
1gq6a_PU_241-256
CI=0.00


[257-278]:
1gq6a_PU_257-278
CI=0.42


[279-295 ]:
1gq6a_PU_279-295
CI=0.00