Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-138]:
1gq8a_PU0_1-138
CI=5.86


[139-318 ]:
1gq8a_PU0_139-318
CI=5.29


Level 1
PU
Molecule needs Java 1.4 Structure


[1-138]:
1gq8a_PU1_1-138
CI=5.86


[139-287]:
1gq8a_PU1_139-287
CI=5.79


[288-318 ]:
1gq8a_PU1_288-318
CI=1.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-41]:
1gq8a_PU2_1-41
CI=2.38


[42-138]:
1gq8a_PU2_42-138
CI=6.17


[139-287]:
1gq8a_PU2_139-287
CI=5.79


[288-318 ]:
1gq8a_PU2_288-318
CI=1.53


Level 3
PU
Molecule needs Java 1.4 Structure


[1-41]:
1gq8a_PU3_1-41
CI=2.38


[42-138]:
1gq8a_PU3_42-138
CI=6.17


[139-223]:
1gq8a_PU3_139-223
CI=4.99


[224-287]:
1gq8a_PU3_224-287
CI=3.71


[288-318 ]:
1gq8a_PU3_288-318
CI=1.53


Level 4
PU
Molecule needs Java 1.4 Structure


[1-41]:
1gq8a_PU4_1-41
CI=2.38


[42-138]:
1gq8a_PU4_42-138
CI=6.17


[139-206]:
1gq8a_PU4_139-206
CI=4.94


[207-223]:
1gq8a_PU4_207-223
CI=0.11


[224-287]:
1gq8a_PU4_224-287
CI=3.71


[288-318 ]:
1gq8a_PU4_288-318
CI=1.53


Level 5
PU
Molecule needs Java 1.4 Structure


[1-41]:
1gq8a_PU5_1-41
CI=2.38


[42-71]:
1gq8a_PU5_42-71
CI=1.34


[72-138]:
1gq8a_PU5_72-138
CI=5.64


[139-206]:
1gq8a_PU5_139-206
CI=4.94


[207-223]:
1gq8a_PU5_207-223
CI=0.11


[224-287]:
1gq8a_PU5_224-287
CI=3.71


[288-318 ]:
1gq8a_PU5_288-318
CI=1.53


Level 6
PU
Molecule needs Java 1.4 Structure


[1-41]:
1gq8a_PU6_1-41
CI=2.38


[42-71]:
1gq8a_PU6_42-71
CI=1.34


[72-89]:
1gq8a_PU6_72-89
CI=1.53


[90-138]:
1gq8a_PU6_90-138
CI=4.71


[139-206]:
1gq8a_PU6_139-206
CI=4.94


[207-223]:
1gq8a_PU6_207-223
CI=0.11


[224-287]:
1gq8a_PU6_224-287
CI=3.71


[288-318 ]:
1gq8a_PU6_288-318
CI=1.53


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gq8a_PU7_1-19
CI=1.47


[20-41]:
1gq8a_PU7_20-41
CI=0.25


[42-71]:
1gq8a_PU7_42-71
CI=1.34


[72-89]:
1gq8a_PU7_72-89
CI=1.53


[90-138]:
1gq8a_PU7_90-138
CI=4.71


[139-206]:
1gq8a_PU7_139-206
CI=4.94


[207-223]:
1gq8a_PU7_207-223
CI=0.11


[224-287]:
1gq8a_PU7_224-287
CI=3.71


[288-318 ]:
1gq8a_PU7_288-318
CI=1.53


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gq8a_PU8_1-19
CI=1.47


[20-41]:
1gq8a_PU8_20-41
CI=0.25


[42-71]:
1gq8a_PU8_42-71
CI=1.34


[72-89]:
1gq8a_PU8_72-89
CI=1.53


[90-138]:
1gq8a_PU8_90-138
CI=4.71


[139-206]:
1gq8a_PU8_139-206
CI=4.94


[207-223]:
1gq8a_PU8_207-223
CI=0.11


[224-239]:
1gq8a_PU8_224-239
CI=0.11


[240-255]:
1gq8a_PU8_240-255
CI=0.00


[256-287]:
1gq8a_PU8_256-287
CI=1.84


[288-318 ]:
1gq8a_PU8_288-318
CI=1.53


Level 9
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gq8a_PU9_1-19
CI=1.47


[20-41]:
1gq8a_PU9_20-41
CI=0.25


[42-71]:
1gq8a_PU9_42-71
CI=1.34


[72-89]:
1gq8a_PU9_72-89
CI=1.53


[90-138]:
1gq8a_PU9_90-138
CI=4.71


[139-186]:
1gq8a_PU9_139-186
CI=4.27


[187-206]:
1gq8a_PU9_187-206
CI=0.56


[207-223]:
1gq8a_PU9_207-223
CI=0.11


[224-239]:
1gq8a_PU9_224-239
CI=0.11


[240-255]:
1gq8a_PU9_240-255
CI=0.00


[256-287]:
1gq8a_PU9_256-287
CI=1.84


[288-318 ]:
1gq8a_PU9_288-318
CI=1.53


Level 10
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gq8a_PU10_1-19
CI=1.47


[20-41]:
1gq8a_PU10_20-41
CI=0.25


[42-71]:
1gq8a_PU10_42-71
CI=1.34


[72-89]:
1gq8a_PU10_72-89
CI=1.53


[90-138]:
1gq8a_PU10_90-138
CI=4.71


[139-168]:
1gq8a_PU10_139-168
CI=2.91


[169-186]:
1gq8a_PU10_169-186
CI=0.71


[187-206]:
1gq8a_PU10_187-206
CI=0.56


[207-223]:
1gq8a_PU10_207-223
CI=0.11


[224-239]:
1gq8a_PU10_224-239
CI=0.11


[240-255]:
1gq8a_PU10_240-255
CI=0.00


[256-287]:
1gq8a_PU10_256-287
CI=1.84


[288-318 ]:
1gq8a_PU10_288-318
CI=1.53


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gq8a_PU_1-19
CI=1.47


[20-41]:
1gq8a_PU_20-41
CI=0.25


[42-71]:
1gq8a_PU_42-71
CI=1.34


[72-89]:
1gq8a_PU_72-89
CI=1.53


[90-113]:
1gq8a_PU_90-113
CI=0.31


[114-138]:
1gq8a_PU_114-138
CI=1.88


[139-168]:
1gq8a_PU_139-168
CI=2.91


[169-186]:
1gq8a_PU_169-186
CI=0.71


[187-206]:
1gq8a_PU_187-206
CI=0.56


[207-223]:
1gq8a_PU_207-223
CI=0.11


[224-239]:
1gq8a_PU_224-239
CI=0.11


[240-255]:
1gq8a_PU_240-255
CI=0.00


[256-287]:
1gq8a_PU_256-287
CI=1.84


[288-318 ]:
1gq8a_PU_288-318
CI=1.53