Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU0_1-22
CI=0.93


[23-143]:
1gqna_PU0_23-143
CI=3.19


[144-252 ]:
1gqna_PU0_144-252
CI=3.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU1_1-22
CI=0.93


[23-143]:
1gqna_PU1_23-143
CI=3.19


[144-225]:
1gqna_PU1_144-225
CI=3.62


[226-252 ]:
1gqna_PU1_226-252
CI=1.28


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU2_1-22
CI=0.93


[23-92]:
1gqna_PU2_23-92
CI=2.75


[93-143]:
1gqna_PU2_93-143
CI=2.02


[144-225]:
1gqna_PU2_144-225
CI=3.62


[226-252 ]:
1gqna_PU2_226-252
CI=1.28


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU3_1-22
CI=0.93


[23-92]:
1gqna_PU3_23-92
CI=2.75


[93-110]:
1gqna_PU3_93-110
CI=0.11


[111-143]:
1gqna_PU3_111-143
CI=2.14


[144-225]:
1gqna_PU3_144-225
CI=3.62


[226-252 ]:
1gqna_PU3_226-252
CI=1.28


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU4_1-22
CI=0.93


[23-42]:
1gqna_PU4_23-42
CI=0.27


[43-92]:
1gqna_PU4_43-92
CI=2.44


[93-110]:
1gqna_PU4_93-110
CI=0.11


[111-143]:
1gqna_PU4_111-143
CI=2.14


[144-225]:
1gqna_PU4_144-225
CI=3.62


[226-252 ]:
1gqna_PU4_226-252
CI=1.28


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU5_1-22
CI=0.93


[23-42]:
1gqna_PU5_23-42
CI=0.27


[43-92]:
1gqna_PU5_43-92
CI=2.44


[93-110]:
1gqna_PU5_93-110
CI=0.11


[111-143]:
1gqna_PU5_111-143
CI=2.14


[144-184]:
1gqna_PU5_144-184
CI=1.94


[185-225]:
1gqna_PU5_185-225
CI=2.46


[226-252 ]:
1gqna_PU5_226-252
CI=1.28


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU6_1-22
CI=0.93


[23-42]:
1gqna_PU6_23-42
CI=0.27


[43-92]:
1gqna_PU6_43-92
CI=2.44


[93-110]:
1gqna_PU6_93-110
CI=0.11


[111-143]:
1gqna_PU6_111-143
CI=2.14


[144-184]:
1gqna_PU6_144-184
CI=1.94


[185-203]:
1gqna_PU6_185-203
CI=0.48


[204-225]:
1gqna_PU6_204-225
CI=1.09


[226-252 ]:
1gqna_PU6_226-252
CI=1.28


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU7_1-22
CI=0.93


[23-42]:
1gqna_PU7_23-42
CI=0.27


[43-75]:
1gqna_PU7_43-75
CI=0.51


[76-92]:
1gqna_PU7_76-92
CI=1.39


[93-110]:
1gqna_PU7_93-110
CI=0.11


[111-143]:
1gqna_PU7_111-143
CI=2.14


[144-184]:
1gqna_PU7_144-184
CI=1.94


[185-203]:
1gqna_PU7_185-203
CI=0.48


[204-225]:
1gqna_PU7_204-225
CI=1.09


[226-252 ]:
1gqna_PU7_226-252
CI=1.28


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU8_1-22
CI=0.93


[23-42]:
1gqna_PU8_23-42
CI=0.27


[43-59]:
1gqna_PU8_43-59
CI=0.11


[60-75]:
1gqna_PU8_60-75
CI=0.11


[76-92]:
1gqna_PU8_76-92
CI=1.39


[93-110]:
1gqna_PU8_93-110
CI=0.11


[111-143]:
1gqna_PU8_111-143
CI=2.14


[144-184]:
1gqna_PU8_144-184
CI=1.94


[185-203]:
1gqna_PU8_185-203
CI=0.48


[204-225]:
1gqna_PU8_204-225
CI=1.09


[226-252 ]:
1gqna_PU8_226-252
CI=1.28


Level 9
PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU9_1-22
CI=0.93


[23-42]:
1gqna_PU9_23-42
CI=0.27


[43-59]:
1gqna_PU9_43-59
CI=0.11


[60-75]:
1gqna_PU9_60-75
CI=0.11


[76-92]:
1gqna_PU9_76-92
CI=1.39


[93-110]:
1gqna_PU9_93-110
CI=0.11


[111-143]:
1gqna_PU9_111-143
CI=2.14


[144-166]:
1gqna_PU9_144-166
CI=0.00


[167-184]:
1gqna_PU9_167-184
CI=0.51


[185-203]:
1gqna_PU9_185-203
CI=0.48


[204-225]:
1gqna_PU9_204-225
CI=1.09


[226-252 ]:
1gqna_PU9_226-252
CI=1.28


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-22]:
1gqna_PU_1-22
CI=0.93


[23-42]:
1gqna_PU_23-42
CI=0.27


[43-59]:
1gqna_PU_43-59
CI=0.11


[60-75]:
1gqna_PU_60-75
CI=0.11


[76-92]:
1gqna_PU_76-92
CI=1.39


[93-110]:
1gqna_PU_93-110
CI=0.11


[111-127]:
1gqna_PU_111-127
CI=0.32


[128-143]:
1gqna_PU_128-143
CI=0.57


[144-166]:
1gqna_PU_144-166
CI=0.00


[167-184]:
1gqna_PU_167-184
CI=0.51


[185-203]:
1gqna_PU_185-203
CI=0.48


[204-225]:
1gqna_PU_204-225
CI=1.09


[226-252 ]:
1gqna_PU_226-252
CI=1.28