Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-117]:
1gqza_PU0_1-117
CI=3.82


[118-261]:
1gqza_PU0_118-261
CI=5.15


[262-274 ]:
1gqza_PU0_262-274
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-70]:
1gqza_PU1_1-70
CI=3.57


[71-117]:
1gqza_PU1_71-117
CI=2.32


[118-261]:
1gqza_PU1_118-261
CI=5.15


[262-274 ]:
1gqza_PU1_262-274
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-70]:
1gqza_PU2_1-70
CI=3.57


[71-117]:
1gqza_PU2_71-117
CI=2.32


[118-197]:
1gqza_PU2_118-197
CI=3.59


[198-261]:
1gqza_PU2_198-261
CI=3.94


[262-274 ]:
1gqza_PU2_262-274
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gqza_PU3_1-24
CI=1.65


[25-41]:
1gqza_PU3_25-41
CI=0.98


[42-70]:
1gqza_PU3_42-70
CI=2.64


[71-117]:
1gqza_PU3_71-117
CI=2.32


[118-197]:
1gqza_PU3_118-197
CI=3.59


[198-261]:
1gqza_PU3_198-261
CI=3.94


[262-274 ]:
1gqza_PU3_262-274
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gqza_PU4_1-24
CI=1.65


[25-41]:
1gqza_PU4_25-41
CI=0.98


[42-70]:
1gqza_PU4_42-70
CI=2.64


[71-117]:
1gqza_PU4_71-117
CI=2.32


[118-156]:
1gqza_PU4_118-156
CI=2.73


[157-197]:
1gqza_PU4_157-197
CI=2.61


[198-261]:
1gqza_PU4_198-261
CI=3.94


[262-274 ]:
1gqza_PU4_262-274
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gqza_PU5_1-24
CI=1.65


[25-41]:
1gqza_PU5_25-41
CI=0.98


[42-70]:
1gqza_PU5_42-70
CI=2.64


[71-92]:
1gqza_PU5_71-92
CI=0.34


[93-117]:
1gqza_PU5_93-117
CI=2.87


[118-156]:
1gqza_PU5_118-156
CI=2.73


[157-197]:
1gqza_PU5_157-197
CI=2.61


[198-261]:
1gqza_PU5_198-261
CI=3.94


[262-274 ]:
1gqza_PU5_262-274
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gqza_PU6_1-24
CI=1.65


[25-41]:
1gqza_PU6_25-41
CI=0.98


[42-70]:
1gqza_PU6_42-70
CI=2.64


[71-92]:
1gqza_PU6_71-92
CI=0.34


[93-117]:
1gqza_PU6_93-117
CI=2.87


[118-135]:
1gqza_PU6_118-135
CI=0.93


[136-156]:
1gqza_PU6_136-156
CI=1.96


[157-197]:
1gqza_PU6_157-197
CI=2.61


[198-261]:
1gqza_PU6_198-261
CI=3.94


[262-274 ]:
1gqza_PU6_262-274
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gqza_PU7_1-24
CI=1.65


[25-41]:
1gqza_PU7_25-41
CI=0.98


[42-70]:
1gqza_PU7_42-70
CI=2.64


[71-92]:
1gqza_PU7_71-92
CI=0.34


[93-117]:
1gqza_PU7_93-117
CI=2.87


[118-135]:
1gqza_PU7_118-135
CI=0.93


[136-156]:
1gqza_PU7_136-156
CI=1.96


[157-197]:
1gqza_PU7_157-197
CI=2.61


[198-220]:
1gqza_PU7_198-220
CI=1.28


[221-261]:
1gqza_PU7_221-261
CI=3.30


[262-274 ]:
1gqza_PU7_262-274
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gqza_PU8_1-24
CI=1.65


[25-41]:
1gqza_PU8_25-41
CI=0.98


[42-70]:
1gqza_PU8_42-70
CI=2.64


[71-92]:
1gqza_PU8_71-92
CI=0.34


[93-117]:
1gqza_PU8_93-117
CI=2.87


[118-135]:
1gqza_PU8_118-135
CI=0.93


[136-156]:
1gqza_PU8_136-156
CI=1.96


[157-197]:
1gqza_PU8_157-197
CI=2.61


[198-220]:
1gqza_PU8_198-220
CI=1.28


[221-241]:
1gqza_PU8_221-241
CI=0.88


[242-261]:
1gqza_PU8_242-261
CI=1.67


[262-274 ]:
1gqza_PU8_262-274
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-24]:
1gqza_PU_1-24
CI=1.65


[25-41]:
1gqza_PU_25-41
CI=0.98


[42-70]:
1gqza_PU_42-70
CI=2.64


[71-92]:
1gqza_PU_71-92
CI=0.34


[93-117]:
1gqza_PU_93-117
CI=2.87


[118-135]:
1gqza_PU_118-135
CI=0.93


[136-156]:
1gqza_PU_136-156
CI=1.96


[157-179]:
1gqza_PU_157-179
CI=0.08


[180-197]:
1gqza_PU_180-197
CI=0.93


[198-220]:
1gqza_PU_198-220
CI=1.28


[221-241]:
1gqza_PU_221-241
CI=0.88


[242-261]:
1gqza_PU_242-261
CI=1.67


[262-274 ]:
1gqza_PU_262-274
CI=0.00