Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-188]:
1gr0a_PU0_1-188
CI=4.32


[189-271]:
1gr0a_PU0_189-271
CI=3.97


[272-328 ]:
1gr0a_PU0_272-328
CI=1.63


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU1_1-23
CI=0.16


[24-48]:
1gr0a_PU1_24-48
CI=1.64


[49-188]:
1gr0a_PU1_49-188
CI=3.66


[189-271]:
1gr0a_PU1_189-271
CI=3.97


[272-328 ]:
1gr0a_PU1_272-328
CI=1.63


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU2_1-23
CI=0.16


[24-48]:
1gr0a_PU2_24-48
CI=1.64


[49-115]:
1gr0a_PU2_49-115
CI=3.07


[116-188]:
1gr0a_PU2_116-188
CI=3.48


[189-271]:
1gr0a_PU2_189-271
CI=3.97


[272-328 ]:
1gr0a_PU2_272-328
CI=1.63


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU3_1-23
CI=0.16


[24-48]:
1gr0a_PU3_24-48
CI=1.64


[49-115]:
1gr0a_PU3_49-115
CI=3.07


[116-188]:
1gr0a_PU3_116-188
CI=3.48


[189-271]:
1gr0a_PU3_189-271
CI=3.97


[272-295]:
1gr0a_PU3_272-295
CI=0.08


[296-328 ]:
1gr0a_PU3_296-328
CI=2.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU4_1-23
CI=0.16


[24-48]:
1gr0a_PU4_24-48
CI=1.64


[49-115]:
1gr0a_PU4_49-115
CI=3.07


[116-188]:
1gr0a_PU4_116-188
CI=3.48


[189-214]:
1gr0a_PU4_189-214
CI=0.42


[215-246]:
1gr0a_PU4_215-246
CI=3.27


[247-271]:
1gr0a_PU4_247-271
CI=2.21


[272-295]:
1gr0a_PU4_272-295
CI=0.08


[296-328 ]:
1gr0a_PU4_296-328
CI=2.11


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU5_1-23
CI=0.16


[24-48]:
1gr0a_PU5_24-48
CI=1.64


[49-91]:
1gr0a_PU5_49-91
CI=2.80


[92-115]:
1gr0a_PU5_92-115
CI=0.78


[116-188]:
1gr0a_PU5_116-188
CI=3.48


[189-214]:
1gr0a_PU5_189-214
CI=0.42


[215-246]:
1gr0a_PU5_215-246
CI=3.27


[247-271]:
1gr0a_PU5_247-271
CI=2.21


[272-295]:
1gr0a_PU5_272-295
CI=0.08


[296-328 ]:
1gr0a_PU5_296-328
CI=2.11


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU6_1-23
CI=0.16


[24-48]:
1gr0a_PU6_24-48
CI=1.64


[49-91]:
1gr0a_PU6_49-91
CI=2.80


[92-115]:
1gr0a_PU6_92-115
CI=0.78


[116-156]:
1gr0a_PU6_116-156
CI=1.76


[157-188]:
1gr0a_PU6_157-188
CI=2.55


[189-214]:
1gr0a_PU6_189-214
CI=0.42


[215-246]:
1gr0a_PU6_215-246
CI=3.27


[247-271]:
1gr0a_PU6_247-271
CI=2.21


[272-295]:
1gr0a_PU6_272-295
CI=0.08


[296-328 ]:
1gr0a_PU6_296-328
CI=2.11


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU7_1-23
CI=0.16


[24-48]:
1gr0a_PU7_24-48
CI=1.64


[49-91]:
1gr0a_PU7_49-91
CI=2.80


[92-115]:
1gr0a_PU7_92-115
CI=0.78


[116-156]:
1gr0a_PU7_116-156
CI=1.76


[157-188]:
1gr0a_PU7_157-188
CI=2.55


[189-214]:
1gr0a_PU7_189-214
CI=0.42


[215-246]:
1gr0a_PU7_215-246
CI=3.27


[247-271]:
1gr0a_PU7_247-271
CI=2.21


[272-295]:
1gr0a_PU7_272-295
CI=0.08


[296-312]:
1gr0a_PU7_296-312
CI=1.50


[313-328 ]:
1gr0a_PU7_313-328
CI=0.11


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-23]:
1gr0a_PU_1-23
CI=0.16


[24-48]:
1gr0a_PU_24-48
CI=1.64


[49-91]:
1gr0a_PU_49-91
CI=2.80


[92-115]:
1gr0a_PU_92-115
CI=0.78


[116-132]:
1gr0a_PU_116-132
CI=0.10


[133-156]:
1gr0a_PU_133-156
CI=0.54


[157-188]:
1gr0a_PU_157-188
CI=2.55


[189-214]:
1gr0a_PU_189-214
CI=0.42


[215-246]:
1gr0a_PU_215-246
CI=3.27


[247-271]:
1gr0a_PU_247-271
CI=2.21


[272-295]:
1gr0a_PU_272-295
CI=0.08


[296-312]:
1gr0a_PU_296-312
CI=1.50


[313-328 ]:
1gr0a_PU_313-328
CI=0.11