Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1gr3a_PU0_1-50
CI=3.15


[51-115]:
1gr3a_PU0_51-115
CI=4.48


[116-132 ]:
1gr3a_PU0_116-132
CI=0.11


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1gr3a_PU1_1-31
CI=2.28


[32-50]:
1gr3a_PU1_32-50
CI=0.89


[51-115]:
1gr3a_PU1_51-115
CI=4.48


[116-132 ]:
1gr3a_PU1_116-132
CI=0.11


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1gr3a_PU2_1-31
CI=2.28


[32-50]:
1gr3a_PU2_32-50
CI=0.89


[51-66]:
1gr3a_PU2_51-66
CI=0.11


[67-104]:
1gr3a_PU2_67-104
CI=1.49


[105-115]:
1gr3a_PU2_105-115
CI=0.17


[116-132 ]:
1gr3a_PU2_116-132
CI=0.11


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-31]:
1gr3a_PU_1-31
CI=2.28


[32-50]:
1gr3a_PU_32-50
CI=0.89


[51-66]:
1gr3a_PU_51-66
CI=0.11


[67-88]:
1gr3a_PU_67-88
CI=0.75


[89-104]:
1gr3a_PU_89-104
CI=0.00


[105-115]:
1gr3a_PU_105-115
CI=0.17


[116-132 ]:
1gr3a_PU_116-132
CI=0.11