Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-95]:
1gs9a_PU0_1-95
CI=1.34


[96-116]:
1gs9a_PU0_96-116
CI=0.17


[117-144 ]:
1gs9a_PU0_117-144
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-53]:
1gs9a_PU1_1-53
CI=1.32


[54-79]:
1gs9a_PU1_54-79
CI=0.07


[80-95]:
1gs9a_PU1_80-95
CI=0.00


[96-116]:
1gs9a_PU1_96-116
CI=0.17


[117-144 ]:
1gs9a_PU1_117-144
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1gs9a_PU_1-21
CI=0.00


[22-53]:
1gs9a_PU_22-53
CI=0.17


[54-79]:
1gs9a_PU_54-79
CI=0.07


[80-95]:
1gs9a_PU_80-95
CI=0.00


[96-116]:
1gs9a_PU_96-116
CI=0.17


[117-144 ]:
1gs9a_PU_117-144
CI=0.00