Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-136]:
1gsa0_PU0_1-136
CI=3.15


[137-200]:
1gsa0_PU0_137-200
CI=3.13


[201-314 ]:
1gsa0_PU0_201-314
CI=3.99


Level 1
PU
Molecule needs Java 1.4 Structure


[1-120]:
1gsa0_PU1_1-120
CI=3.52


[121-136]:
1gsa0_PU1_121-136
CI=0.23


[137-200]:
1gsa0_PU1_137-200
CI=3.13


[201-314 ]:
1gsa0_PU1_201-314
CI=3.99


Level 2
PU
Molecule needs Java 1.4 Structure


[1-120]:
1gsa0_PU2_1-120
CI=3.52


[121-136]:
1gsa0_PU2_121-136
CI=0.23


[137-200]:
1gsa0_PU2_137-200
CI=3.13


[201-298]:
1gsa0_PU2_201-298
CI=4.25


[299-314 ]:
1gsa0_PU2_299-314
CI=0.11


Level 3
PU
Molecule needs Java 1.4 Structure


[1-88]:
1gsa0_PU3_1-88
CI=3.64


[89-120]:
1gsa0_PU3_89-120
CI=0.76


[121-136]:
1gsa0_PU3_121-136
CI=0.23


[137-200]:
1gsa0_PU3_137-200
CI=3.13


[201-298]:
1gsa0_PU3_201-298
CI=4.25


[299-314 ]:
1gsa0_PU3_299-314
CI=0.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-38]:
1gsa0_PU4_1-38
CI=1.61


[39-79]:
1gsa0_PU4_39-79
CI=2.76


[80-88]:
1gsa0_PU4_80-88
CI=0.00


[89-120]:
1gsa0_PU4_89-120
CI=0.76


[121-136]:
1gsa0_PU4_121-136
CI=0.23


[137-200]:
1gsa0_PU4_137-200
CI=3.13


[201-298]:
1gsa0_PU4_201-298
CI=4.25


[299-314 ]:
1gsa0_PU4_299-314
CI=0.11


Level 5
PU
Molecule needs Java 1.4 Structure


[1-38]:
1gsa0_PU5_1-38
CI=1.61


[39-79]:
1gsa0_PU5_39-79
CI=2.76


[80-88]:
1gsa0_PU5_80-88
CI=0.00


[89-120]:
1gsa0_PU5_89-120
CI=0.76


[121-136]:
1gsa0_PU5_121-136
CI=0.23


[137-200]:
1gsa0_PU5_137-200
CI=3.13


[201-247]:
1gsa0_PU5_201-247
CI=4.05


[248-267]:
1gsa0_PU5_248-267
CI=0.00


[268-298]:
1gsa0_PU5_268-298
CI=1.48


[299-314 ]:
1gsa0_PU5_299-314
CI=0.11


Level 6
PU
Molecule needs Java 1.4 Structure


[1-38]:
1gsa0_PU6_1-38
CI=1.61


[39-55]:
1gsa0_PU6_39-55
CI=1.51


[56-79]:
1gsa0_PU6_56-79
CI=1.50


[80-88]:
1gsa0_PU6_80-88
CI=0.00


[89-120]:
1gsa0_PU6_89-120
CI=0.76


[121-136]:
1gsa0_PU6_121-136
CI=0.23


[137-200]:
1gsa0_PU6_137-200
CI=3.13


[201-247]:
1gsa0_PU6_201-247
CI=4.05


[248-267]:
1gsa0_PU6_248-267
CI=0.00


[268-298]:
1gsa0_PU6_268-298
CI=1.48


[299-314 ]:
1gsa0_PU6_299-314
CI=0.11


Level 7
PU
Molecule needs Java 1.4 Structure


[1-38]:
1gsa0_PU7_1-38
CI=1.61


[39-55]:
1gsa0_PU7_39-55
CI=1.51


[56-79]:
1gsa0_PU7_56-79
CI=1.50


[80-88]:
1gsa0_PU7_80-88
CI=0.00


[89-120]:
1gsa0_PU7_89-120
CI=0.76


[121-136]:
1gsa0_PU7_121-136
CI=0.23


[137-154]:
1gsa0_PU7_137-154
CI=0.19


[155-178]:
1gsa0_PU7_155-178
CI=1.90


[179-200]:
1gsa0_PU7_179-200
CI=0.59


[201-247]:
1gsa0_PU7_201-247
CI=4.05


[248-267]:
1gsa0_PU7_248-267
CI=0.00


[268-298]:
1gsa0_PU7_268-298
CI=1.48


[299-314 ]:
1gsa0_PU7_299-314
CI=0.11


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-22]:
1gsa0_PU_1-22
CI=0.17


[23-38]:
1gsa0_PU_23-38
CI=0.34


[39-55]:
1gsa0_PU_39-55
CI=1.51


[56-79]:
1gsa0_PU_56-79
CI=1.50


[80-88]:
1gsa0_PU_80-88
CI=0.00


[89-120]:
1gsa0_PU_89-120
CI=0.76


[121-136]:
1gsa0_PU_121-136
CI=0.23


[137-154]:
1gsa0_PU_137-154
CI=0.19


[155-178]:
1gsa0_PU_155-178
CI=1.90


[179-200]:
1gsa0_PU_179-200
CI=0.59


[201-247]:
1gsa0_PU_201-247
CI=4.05


[248-267]:
1gsa0_PU_248-267
CI=0.00


[268-298]:
1gsa0_PU_268-298
CI=1.48


[299-314 ]:
1gsa0_PU_299-314
CI=0.11