Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-83]:
1gtka_PU0_1-83
CI=2.51


[84-173]:
1gtka_PU0_84-173
CI=3.38


[174-294 ]:
1gtka_PU0_174-294
CI=3.37


Level 1
PU
Molecule needs Java 1.4 Structure


[1-83]:
1gtka_PU1_1-83
CI=2.51


[84-173]:
1gtka_PU1_84-173
CI=3.38


[174-206]:
1gtka_PU1_174-206
CI=0.22


[207-294 ]:
1gtka_PU1_207-294
CI=3.83


Level 2
PU
Molecule needs Java 1.4 Structure


[1-83]:
1gtka_PU2_1-83
CI=2.51


[84-100]:
1gtka_PU2_84-100
CI=0.43


[101-146]:
1gtka_PU2_101-146
CI=2.09


[147-173]:
1gtka_PU2_147-173
CI=0.61


[174-206]:
1gtka_PU2_174-206
CI=0.22


[207-294 ]:
1gtka_PU2_207-294
CI=3.83


Level 3
PU
Molecule needs Java 1.4 Structure


[1-83]:
1gtka_PU3_1-83
CI=2.51


[84-100]:
1gtka_PU3_84-100
CI=0.43


[101-129]:
1gtka_PU3_101-129
CI=2.23


[130-146]:
1gtka_PU3_130-146
CI=0.33


[147-173]:
1gtka_PU3_147-173
CI=0.61


[174-206]:
1gtka_PU3_174-206
CI=0.22


[207-294 ]:
1gtka_PU3_207-294
CI=3.83


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gtka_PU4_1-40
CI=2.40


[41-83]:
1gtka_PU4_41-83
CI=0.74


[84-100]:
1gtka_PU4_84-100
CI=0.43


[101-129]:
1gtka_PU4_101-129
CI=2.23


[130-146]:
1gtka_PU4_130-146
CI=0.33


[147-173]:
1gtka_PU4_147-173
CI=0.61


[174-206]:
1gtka_PU4_174-206
CI=0.22


[207-294 ]:
1gtka_PU4_207-294
CI=3.83


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gtka_PU5_1-40
CI=2.40


[41-83]:
1gtka_PU5_41-83
CI=0.74


[84-100]:
1gtka_PU5_84-100
CI=0.43


[101-129]:
1gtka_PU5_101-129
CI=2.23


[130-146]:
1gtka_PU5_130-146
CI=0.33


[147-173]:
1gtka_PU5_147-173
CI=0.61


[174-206]:
1gtka_PU5_174-206
CI=0.22


[207-275]:
1gtka_PU5_207-275
CI=4.10


[276-294 ]:
1gtka_PU5_276-294
CI=1.06


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gtka_PU6_1-40
CI=2.40


[41-83]:
1gtka_PU6_41-83
CI=0.74


[84-100]:
1gtka_PU6_84-100
CI=0.43


[101-129]:
1gtka_PU6_101-129
CI=2.23


[130-146]:
1gtka_PU6_130-146
CI=0.33


[147-173]:
1gtka_PU6_147-173
CI=0.61


[174-190]:
1gtka_PU6_174-190
CI=0.00


[191-206]:
1gtka_PU6_191-206
CI=0.00


[207-275]:
1gtka_PU6_207-275
CI=4.10


[276-294 ]:
1gtka_PU6_276-294
CI=1.06


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gtka_PU7_1-40
CI=2.40


[41-57]:
1gtka_PU7_41-57
CI=0.32


[58-83]:
1gtka_PU7_58-83
CI=0.07


[84-100]:
1gtka_PU7_84-100
CI=0.43


[101-129]:
1gtka_PU7_101-129
CI=2.23


[130-146]:
1gtka_PU7_130-146
CI=0.33


[147-173]:
1gtka_PU7_147-173
CI=0.61


[174-190]:
1gtka_PU7_174-190
CI=0.00


[191-206]:
1gtka_PU7_191-206
CI=0.00


[207-275]:
1gtka_PU7_207-275
CI=4.10


[276-294 ]:
1gtka_PU7_276-294
CI=1.06


Level 8
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gtka_PU8_1-40
CI=2.40


[41-57]:
1gtka_PU8_41-57
CI=0.32


[58-83]:
1gtka_PU8_58-83
CI=0.07


[84-100]:
1gtka_PU8_84-100
CI=0.43


[101-129]:
1gtka_PU8_101-129
CI=2.23


[130-146]:
1gtka_PU8_130-146
CI=0.33


[147-173]:
1gtka_PU8_147-173
CI=0.61


[174-190]:
1gtka_PU8_174-190
CI=0.00


[191-206]:
1gtka_PU8_191-206
CI=0.00


[207-222]:
1gtka_PU8_207-222
CI=0.22


[223-261]:
1gtka_PU8_223-261
CI=3.44


[262-275]:
1gtka_PU8_262-275
CI=0.00


[276-294 ]:
1gtka_PU8_276-294
CI=1.06


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gtka_PU9_1-20
CI=0.65


[21-40]:
1gtka_PU9_21-40
CI=0.55


[41-57]:
1gtka_PU9_41-57
CI=0.32


[58-83]:
1gtka_PU9_58-83
CI=0.07


[84-100]:
1gtka_PU9_84-100
CI=0.43


[101-129]:
1gtka_PU9_101-129
CI=2.23


[130-146]:
1gtka_PU9_130-146
CI=0.33


[147-173]:
1gtka_PU9_147-173
CI=0.61


[174-190]:
1gtka_PU9_174-190
CI=0.00


[191-206]:
1gtka_PU9_191-206
CI=0.00


[207-222]:
1gtka_PU9_207-222
CI=0.22


[223-261]:
1gtka_PU9_223-261
CI=3.44


[262-275]:
1gtka_PU9_262-275
CI=0.00


[276-294 ]:
1gtka_PU9_276-294
CI=1.06


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-20]:
1gtka_PU_1-20
CI=0.65


[21-40]:
1gtka_PU_21-40
CI=0.55


[41-57]:
1gtka_PU_41-57
CI=0.32


[58-83]:
1gtka_PU_58-83
CI=0.07


[84-100]:
1gtka_PU_84-100
CI=0.43


[101-129]:
1gtka_PU_101-129
CI=2.23


[130-146]:
1gtka_PU_130-146
CI=0.33


[147-173]:
1gtka_PU_147-173
CI=0.61


[174-190]:
1gtka_PU_174-190
CI=0.00


[191-206]:
1gtka_PU_191-206
CI=0.00


[207-222]:
1gtka_PU_207-222
CI=0.22


[223-245]:
1gtka_PU_223-245
CI=2.29


[246-261]:
1gtka_PU_246-261
CI=0.12


[262-275]:
1gtka_PU_262-275
CI=0.00


[276-294 ]:
1gtka_PU_276-294
CI=1.06