Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gu4a_PU0_1-40
CI=0.09


[41-65 ]:
1gu4a_PU0_41-65
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-21]:
1gu4a_PU_1-21
CI=0.18


[22-40]:
1gu4a_PU_22-40
CI=0.00


[41-65 ]:
1gu4a_PU_41-65
CI=0.00