Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-113]:
1guda_PU0_1-113
CI=3.51


[114-246]:
1guda_PU0_114-246
CI=4.40


[247-288 ]:
1guda_PU0_247-288
CI=0.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-64]:
1guda_PU1_1-64
CI=2.51


[65-113]:
1guda_PU1_65-113
CI=2.93


[114-246]:
1guda_PU1_114-246
CI=4.40


[247-288 ]:
1guda_PU1_247-288
CI=0.59


Level 2
PU
Molecule needs Java 1.4 Structure


[1-64]:
1guda_PU2_1-64
CI=2.51


[65-113]:
1guda_PU2_65-113
CI=2.93


[114-172]:
1guda_PU2_114-172
CI=2.96


[173-246]:
1guda_PU2_173-246
CI=3.64


[247-288 ]:
1guda_PU2_247-288
CI=0.59


Level 3
PU
Molecule needs Java 1.4 Structure


[1-64]:
1guda_PU3_1-64
CI=2.51


[65-113]:
1guda_PU3_65-113
CI=2.93


[114-172]:
1guda_PU3_114-172
CI=2.96


[173-246]:
1guda_PU3_173-246
CI=3.64


[247-269]:
1guda_PU3_247-269
CI=0.08


[270-288 ]:
1guda_PU3_270-288
CI=0.09


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1guda_PU4_1-16
CI=0.23


[17-32]:
1guda_PU4_17-32
CI=0.00


[33-64]:
1guda_PU4_33-64
CI=0.98


[65-113]:
1guda_PU4_65-113
CI=2.93


[114-172]:
1guda_PU4_114-172
CI=2.96


[173-246]:
1guda_PU4_173-246
CI=3.64


[247-269]:
1guda_PU4_247-269
CI=0.08


[270-288 ]:
1guda_PU4_270-288
CI=0.09


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1guda_PU5_1-16
CI=0.23


[17-32]:
1guda_PU5_17-32
CI=0.00


[33-64]:
1guda_PU5_33-64
CI=0.98


[65-113]:
1guda_PU5_65-113
CI=2.93


[114-172]:
1guda_PU5_114-172
CI=2.96


[173-225]:
1guda_PU5_173-225
CI=2.85


[226-246]:
1guda_PU5_226-246
CI=1.77


[247-269]:
1guda_PU5_247-269
CI=0.08


[270-288 ]:
1guda_PU5_270-288
CI=0.09


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1guda_PU6_1-16
CI=0.23


[17-32]:
1guda_PU6_17-32
CI=0.00


[33-64]:
1guda_PU6_33-64
CI=0.98


[65-113]:
1guda_PU6_65-113
CI=2.93


[114-172]:
1guda_PU6_114-172
CI=2.96


[173-194]:
1guda_PU6_173-194
CI=0.35


[195-225]:
1guda_PU6_195-225
CI=2.20


[226-246]:
1guda_PU6_226-246
CI=1.77


[247-269]:
1guda_PU6_247-269
CI=0.08


[270-288 ]:
1guda_PU6_270-288
CI=0.09


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1guda_PU7_1-16
CI=0.23


[17-32]:
1guda_PU7_17-32
CI=0.00


[33-64]:
1guda_PU7_33-64
CI=0.98


[65-113]:
1guda_PU7_65-113
CI=2.93


[114-132]:
1guda_PU7_114-132
CI=0.00


[133-172]:
1guda_PU7_133-172
CI=2.25


[173-194]:
1guda_PU7_173-194
CI=0.35


[195-225]:
1guda_PU7_195-225
CI=2.20


[226-246]:
1guda_PU7_226-246
CI=1.77


[247-269]:
1guda_PU7_247-269
CI=0.08


[270-288 ]:
1guda_PU7_270-288
CI=0.09


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1guda_PU8_1-16
CI=0.23


[17-32]:
1guda_PU8_17-32
CI=0.00


[33-64]:
1guda_PU8_33-64
CI=0.98


[65-113]:
1guda_PU8_65-113
CI=2.93


[114-132]:
1guda_PU8_114-132
CI=0.00


[133-155]:
1guda_PU8_133-155
CI=0.64


[156-172]:
1guda_PU8_156-172
CI=0.53


[173-194]:
1guda_PU8_173-194
CI=0.35


[195-225]:
1guda_PU8_195-225
CI=2.20


[226-246]:
1guda_PU8_226-246
CI=1.77


[247-269]:
1guda_PU8_247-269
CI=0.08


[270-288 ]:
1guda_PU8_270-288
CI=0.09


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1guda_PU_1-16
CI=0.23


[17-32]:
1guda_PU_17-32
CI=0.00


[33-64]:
1guda_PU_33-64
CI=0.98


[65-84]:
1guda_PU_65-84
CI=0.09


[85-113]:
1guda_PU_85-113
CI=1.58


[114-132]:
1guda_PU_114-132
CI=0.00


[133-155]:
1guda_PU_133-155
CI=0.64


[156-172]:
1guda_PU_156-172
CI=0.53


[173-194]:
1guda_PU_173-194
CI=0.35


[195-225]:
1guda_PU_195-225
CI=2.20


[226-246]:
1guda_PU_226-246
CI=1.77


[247-269]:
1guda_PU_247-269
CI=0.08


[270-288 ]:
1guda_PU_270-288
CI=0.09