Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1guia_PU0_1-65
CI=3.99


[66-135]:
1guia_PU0_66-135
CI=4.46


[136-155 ]:
1guia_PU0_136-155
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1guia_PU1_1-21
CI=0.70


[22-65]:
1guia_PU1_22-65
CI=3.91


[66-135]:
1guia_PU1_66-135
CI=4.46


[136-155 ]:
1guia_PU1_136-155
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1guia_PU2_1-21
CI=0.70


[22-65]:
1guia_PU2_22-65
CI=3.91


[66-81]:
1guia_PU2_66-81
CI=0.11


[82-113]:
1guia_PU2_82-113
CI=3.29


[114-135]:
1guia_PU2_114-135
CI=0.00


[136-155 ]:
1guia_PU2_136-155
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1guia_PU_1-21
CI=0.70


[22-42]:
1guia_PU_22-42
CI=0.90


[43-65]:
1guia_PU_43-65
CI=0.25


[66-81]:
1guia_PU_66-81
CI=0.11


[82-113]:
1guia_PU_82-113
CI=3.29


[114-135]:
1guia_PU_114-135
CI=0.00


[136-155 ]:
1guia_PU_136-155
CI=0.00