Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1guqa_PU0_1-84
CI=1.34


[85-100]:
1guqa_PU0_85-100
CI=1.73


[101-347 ]:
1guqa_PU0_101-347
CI=4.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU1_1-36
CI=1.49


[37-84]:
1guqa_PU1_37-84
CI=1.19


[85-100]:
1guqa_PU1_85-100
CI=1.73


[101-347 ]:
1guqa_PU1_101-347
CI=4.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU2_1-36
CI=1.49


[37-67]:
1guqa_PU2_37-67
CI=1.65


[68-84]:
1guqa_PU2_68-84
CI=0.00


[85-100]:
1guqa_PU2_85-100
CI=1.73


[101-347 ]:
1guqa_PU2_101-347
CI=4.18


Level 3
PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU3_1-36
CI=1.49


[37-67]:
1guqa_PU3_37-67
CI=1.65


[68-84]:
1guqa_PU3_68-84
CI=0.00


[85-100]:
1guqa_PU3_85-100
CI=1.73


[101-300]:
1guqa_PU3_101-300
CI=4.02


[301-324]:
1guqa_PU3_301-324
CI=1.25


[325-347 ]:
1guqa_PU3_325-347
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU4_1-36
CI=1.49


[37-67]:
1guqa_PU4_37-67
CI=1.65


[68-84]:
1guqa_PU4_68-84
CI=0.00


[85-100]:
1guqa_PU4_85-100
CI=1.73


[101-175]:
1guqa_PU4_101-175
CI=2.80


[176-300]:
1guqa_PU4_176-300
CI=3.23


[301-324]:
1guqa_PU4_301-324
CI=1.25


[325-347 ]:
1guqa_PU4_325-347
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU5_1-36
CI=1.49


[37-67]:
1guqa_PU5_37-67
CI=1.65


[68-84]:
1guqa_PU5_68-84
CI=0.00


[85-100]:
1guqa_PU5_85-100
CI=1.73


[101-175]:
1guqa_PU5_101-175
CI=2.80


[176-245]:
1guqa_PU5_176-245
CI=1.91


[246-273]:
1guqa_PU5_246-273
CI=0.27


[274-300]:
1guqa_PU5_274-300
CI=2.25


[301-324]:
1guqa_PU5_301-324
CI=1.25


[325-347 ]:
1guqa_PU5_325-347
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU6_1-36
CI=1.49


[37-67]:
1guqa_PU6_37-67
CI=1.65


[68-84]:
1guqa_PU6_68-84
CI=0.00


[85-100]:
1guqa_PU6_85-100
CI=1.73


[101-175]:
1guqa_PU6_101-175
CI=2.80


[176-196]:
1guqa_PU6_176-196
CI=0.72


[197-245]:
1guqa_PU6_197-245
CI=2.39


[246-273]:
1guqa_PU6_246-273
CI=0.27


[274-300]:
1guqa_PU6_274-300
CI=2.25


[301-324]:
1guqa_PU6_301-324
CI=1.25


[325-347 ]:
1guqa_PU6_325-347
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU7_1-36
CI=1.49


[37-67]:
1guqa_PU7_37-67
CI=1.65


[68-84]:
1guqa_PU7_68-84
CI=0.00


[85-100]:
1guqa_PU7_85-100
CI=1.73


[101-116]:
1guqa_PU7_101-116
CI=0.00


[117-132]:
1guqa_PU7_117-132
CI=0.12


[133-175]:
1guqa_PU7_133-175
CI=2.22


[176-196]:
1guqa_PU7_176-196
CI=0.72


[197-245]:
1guqa_PU7_197-245
CI=2.39


[246-273]:
1guqa_PU7_246-273
CI=0.27


[274-300]:
1guqa_PU7_274-300
CI=2.25


[301-324]:
1guqa_PU7_301-324
CI=1.25


[325-347 ]:
1guqa_PU7_325-347
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-36]:
1guqa_PU_1-36
CI=1.49


[37-67]:
1guqa_PU_37-67
CI=1.65


[68-84]:
1guqa_PU_68-84
CI=0.00


[85-100]:
1guqa_PU_85-100
CI=1.73


[101-116]:
1guqa_PU_101-116
CI=0.00


[117-132]:
1guqa_PU_117-132
CI=0.12


[133-175]:
1guqa_PU_133-175
CI=2.22


[176-196]:
1guqa_PU_176-196
CI=0.72


[197-213]:
1guqa_PU_197-213
CI=0.33


[214-245]:
1guqa_PU_214-245
CI=1.91


[246-273]:
1guqa_PU_246-273
CI=0.27


[274-300]:
1guqa_PU_274-300
CI=2.25


[301-324]:
1guqa_PU_301-324
CI=1.25


[325-347 ]:
1guqa_PU_325-347
CI=0.00