Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU0_1-37
CI=1.23


[38-163]:
1gvea_PU0_38-163
CI=3.78


[164-324 ]:
1gvea_PU0_164-324
CI=2.48


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU1_1-37
CI=1.23


[38-163]:
1gvea_PU1_38-163
CI=3.78


[164-202]:
1gvea_PU1_164-202
CI=1.12


[203-231]:
1gvea_PU1_203-231
CI=0.84


[232-324 ]:
1gvea_PU1_232-324
CI=1.49


Level 2
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU2_1-37
CI=1.23


[38-163]:
1gvea_PU2_38-163
CI=3.78


[164-202]:
1gvea_PU2_164-202
CI=1.12


[203-231]:
1gvea_PU2_203-231
CI=0.84


[232-256]:
1gvea_PU2_232-256
CI=0.52


[257-300]:
1gvea_PU2_257-300
CI=1.24


[301-324 ]:
1gvea_PU2_301-324
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU3_1-37
CI=1.23


[38-112]:
1gvea_PU3_38-112
CI=3.36


[113-163]:
1gvea_PU3_113-163
CI=1.91


[164-202]:
1gvea_PU3_164-202
CI=1.12


[203-231]:
1gvea_PU3_203-231
CI=0.84


[232-256]:
1gvea_PU3_232-256
CI=0.52


[257-300]:
1gvea_PU3_257-300
CI=1.24


[301-324 ]:
1gvea_PU3_301-324
CI=0.08


Level 4
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU4_1-37
CI=1.23


[38-112]:
1gvea_PU4_38-112
CI=3.36


[113-163]:
1gvea_PU4_113-163
CI=1.91


[164-202]:
1gvea_PU4_164-202
CI=1.12


[203-231]:
1gvea_PU4_203-231
CI=0.84


[232-256]:
1gvea_PU4_232-256
CI=0.52


[257-279]:
1gvea_PU4_257-279
CI=0.40


[280-300]:
1gvea_PU4_280-300
CI=0.35


[301-324 ]:
1gvea_PU4_301-324
CI=0.08


Level 5
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU5_1-37
CI=1.23


[38-71]:
1gvea_PU5_38-71
CI=1.39


[72-87]:
1gvea_PU5_72-87
CI=0.69


[88-112]:
1gvea_PU5_88-112
CI=0.59


[113-163]:
1gvea_PU5_113-163
CI=1.91


[164-202]:
1gvea_PU5_164-202
CI=1.12


[203-231]:
1gvea_PU5_203-231
CI=0.84


[232-256]:
1gvea_PU5_232-256
CI=0.52


[257-279]:
1gvea_PU5_257-279
CI=0.40


[280-300]:
1gvea_PU5_280-300
CI=0.35


[301-324 ]:
1gvea_PU5_301-324
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU6_1-37
CI=1.23


[38-55]:
1gvea_PU6_38-55
CI=0.41


[56-71]:
1gvea_PU6_56-71
CI=0.91


[72-87]:
1gvea_PU6_72-87
CI=0.69


[88-112]:
1gvea_PU6_88-112
CI=0.59


[113-163]:
1gvea_PU6_113-163
CI=1.91


[164-202]:
1gvea_PU6_164-202
CI=1.12


[203-231]:
1gvea_PU6_203-231
CI=0.84


[232-256]:
1gvea_PU6_232-256
CI=0.52


[257-279]:
1gvea_PU6_257-279
CI=0.40


[280-300]:
1gvea_PU6_280-300
CI=0.35


[301-324 ]:
1gvea_PU6_301-324
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU7_1-37
CI=1.23


[38-55]:
1gvea_PU7_38-55
CI=0.41


[56-71]:
1gvea_PU7_56-71
CI=0.91


[72-87]:
1gvea_PU7_72-87
CI=0.69


[88-112]:
1gvea_PU7_88-112
CI=0.59


[113-163]:
1gvea_PU7_113-163
CI=1.91


[164-184]:
1gvea_PU7_164-184
CI=0.17


[185-202]:
1gvea_PU7_185-202
CI=0.10


[203-231]:
1gvea_PU7_203-231
CI=0.84


[232-256]:
1gvea_PU7_232-256
CI=0.52


[257-279]:
1gvea_PU7_257-279
CI=0.40


[280-300]:
1gvea_PU7_280-300
CI=0.35


[301-324 ]:
1gvea_PU7_301-324
CI=0.08


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-37]:
1gvea_PU_1-37
CI=1.23


[38-55]:
1gvea_PU_38-55
CI=0.41


[56-71]:
1gvea_PU_56-71
CI=0.91


[72-87]:
1gvea_PU_72-87
CI=0.69


[88-112]:
1gvea_PU_88-112
CI=0.59


[113-135]:
1gvea_PU_113-135
CI=0.40


[136-163]:
1gvea_PU_136-163
CI=1.01


[164-184]:
1gvea_PU_164-184
CI=0.17


[185-202]:
1gvea_PU_185-202
CI=0.10


[203-231]:
1gvea_PU_203-231
CI=0.84


[232-256]:
1gvea_PU_232-256
CI=0.52


[257-279]:
1gvea_PU_257-279
CI=0.40


[280-300]:
1gvea_PU_280-300
CI=0.35


[301-324 ]:
1gvea_PU_301-324
CI=0.08