Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-180]:
1gvoa_PU0_1-180
CI=4.82


[181-319]:
1gvoa_PU0_181-319
CI=3.28


[320-362 ]:
1gvoa_PU0_320-362
CI=1.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-102]:
1gvoa_PU1_1-102
CI=4.33


[103-154]:
1gvoa_PU1_103-154
CI=3.83


[155-180]:
1gvoa_PU1_155-180
CI=0.42


[181-319]:
1gvoa_PU1_181-319
CI=3.28


[320-362 ]:
1gvoa_PU1_320-362
CI=1.72


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU2_1-19
CI=2.26


[20-102]:
1gvoa_PU2_20-102
CI=4.44


[103-154]:
1gvoa_PU2_103-154
CI=3.83


[155-180]:
1gvoa_PU2_155-180
CI=0.42


[181-319]:
1gvoa_PU2_181-319
CI=3.28


[320-362 ]:
1gvoa_PU2_320-362
CI=1.72


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU3_1-19
CI=2.26


[20-102]:
1gvoa_PU3_20-102
CI=4.44


[103-154]:
1gvoa_PU3_103-154
CI=3.83


[155-180]:
1gvoa_PU3_155-180
CI=0.42


[181-263]:
1gvoa_PU3_181-263
CI=2.51


[264-319]:
1gvoa_PU3_264-319
CI=2.34


[320-362 ]:
1gvoa_PU3_320-362
CI=1.72


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU4_1-19
CI=2.26


[20-102]:
1gvoa_PU4_20-102
CI=4.44


[103-154]:
1gvoa_PU4_103-154
CI=3.83


[155-180]:
1gvoa_PU4_155-180
CI=0.42


[181-214]:
1gvoa_PU4_181-214
CI=2.46


[215-231]:
1gvoa_PU4_215-231
CI=0.31


[232-263]:
1gvoa_PU4_232-263
CI=0.77


[264-319]:
1gvoa_PU4_264-319
CI=2.34


[320-362 ]:
1gvoa_PU4_320-362
CI=1.72


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU5_1-19
CI=2.26


[20-102]:
1gvoa_PU5_20-102
CI=4.44


[103-154]:
1gvoa_PU5_103-154
CI=3.83


[155-180]:
1gvoa_PU5_155-180
CI=0.42


[181-214]:
1gvoa_PU5_181-214
CI=2.46


[215-231]:
1gvoa_PU5_215-231
CI=0.31


[232-263]:
1gvoa_PU5_232-263
CI=0.77


[264-300]:
1gvoa_PU5_264-300
CI=1.81


[301-319]:
1gvoa_PU5_301-319
CI=0.78


[320-362 ]:
1gvoa_PU5_320-362
CI=1.72


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU6_1-19
CI=2.26


[20-102]:
1gvoa_PU6_20-102
CI=4.44


[103-154]:
1gvoa_PU6_103-154
CI=3.83


[155-180]:
1gvoa_PU6_155-180
CI=0.42


[181-214]:
1gvoa_PU6_181-214
CI=2.46


[215-231]:
1gvoa_PU6_215-231
CI=0.31


[232-263]:
1gvoa_PU6_232-263
CI=0.77


[264-300]:
1gvoa_PU6_264-300
CI=1.81


[301-319]:
1gvoa_PU6_301-319
CI=0.78


[320-343]:
1gvoa_PU6_320-343
CI=1.17


[344-362 ]:
1gvoa_PU6_344-362
CI=0.57


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU7_1-19
CI=2.26


[20-102]:
1gvoa_PU7_20-102
CI=4.44


[103-154]:
1gvoa_PU7_103-154
CI=3.83


[155-180]:
1gvoa_PU7_155-180
CI=0.42


[181-197]:
1gvoa_PU7_181-197
CI=0.65


[198-214]:
1gvoa_PU7_198-214
CI=1.09


[215-231]:
1gvoa_PU7_215-231
CI=0.31


[232-263]:
1gvoa_PU7_232-263
CI=0.77


[264-300]:
1gvoa_PU7_264-300
CI=1.81


[301-319]:
1gvoa_PU7_301-319
CI=0.78


[320-343]:
1gvoa_PU7_320-343
CI=1.17


[344-362 ]:
1gvoa_PU7_344-362
CI=0.57


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU8_1-19
CI=2.26


[20-102]:
1gvoa_PU8_20-102
CI=4.44


[103-119]:
1gvoa_PU8_103-119
CI=1.65


[120-154]:
1gvoa_PU8_120-154
CI=2.37


[155-180]:
1gvoa_PU8_155-180
CI=0.42


[181-197]:
1gvoa_PU8_181-197
CI=0.65


[198-214]:
1gvoa_PU8_198-214
CI=1.09


[215-231]:
1gvoa_PU8_215-231
CI=0.31


[232-263]:
1gvoa_PU8_232-263
CI=0.77


[264-300]:
1gvoa_PU8_264-300
CI=1.81


[301-319]:
1gvoa_PU8_301-319
CI=0.78


[320-343]:
1gvoa_PU8_320-343
CI=1.17


[344-362 ]:
1gvoa_PU8_344-362
CI=0.57


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvoa_PU_1-19
CI=2.26


[20-58]:
1gvoa_PU_20-58
CI=1.75


[59-82]:
1gvoa_PU_59-82
CI=1.10


[83-102]:
1gvoa_PU_83-102
CI=0.37


[103-119]:
1gvoa_PU_103-119
CI=1.65


[120-154]:
1gvoa_PU_120-154
CI=2.37


[155-180]:
1gvoa_PU_155-180
CI=0.42


[181-197]:
1gvoa_PU_181-197
CI=0.65


[198-214]:
1gvoa_PU_198-214
CI=1.09


[215-231]:
1gvoa_PU_215-231
CI=0.31


[232-263]:
1gvoa_PU_232-263
CI=0.77


[264-300]:
1gvoa_PU_264-300
CI=1.81


[301-319]:
1gvoa_PU_301-319
CI=0.78


[320-343]:
1gvoa_PU_320-343
CI=1.17


[344-362 ]:
1gvoa_PU_344-362
CI=0.57