Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1gvp0_PU0_1-62
CI=3.79


[63-87 ]:
1gvp0_PU0_63-87
CI=2.27


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvp0_PU1_1-19
CI=0.00


[20-54]:
1gvp0_PU1_20-54
CI=2.14


[55-62]:
1gvp0_PU1_55-62
CI=0.00


[63-87 ]:
1gvp0_PU1_63-87
CI=2.27


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gvp0_PU_1-19
CI=0.00


[20-36]:
1gvp0_PU_20-36
CI=0.11


[37-54]:
1gvp0_PU_37-54
CI=0.10


[55-62]:
1gvp0_PU_55-62
CI=0.00


[63-87 ]:
1gvp0_PU_63-87
CI=2.27