Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-135]:
1gwma_PU0_1-135
CI=6.21


[136-153 ]:
1gwma_PU0_136-153
CI=0.10


Level 1
PU
Molecule needs Java 1.4 Structure


[1-55]:
1gwma_PU1_1-55
CI=3.01


[56-116]:
1gwma_PU1_56-116
CI=4.87


[117-135]:
1gwma_PU1_117-135
CI=0.29


[136-153 ]:
1gwma_PU1_136-153
CI=0.10


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gwma_PU2_1-19
CI=0.29


[20-55]:
1gwma_PU2_20-55
CI=3.35


[56-116]:
1gwma_PU2_56-116
CI=4.87


[117-135]:
1gwma_PU2_117-135
CI=0.29


[136-153 ]:
1gwma_PU2_136-153
CI=0.10


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gwma_PU_1-19
CI=0.29


[20-55]:
1gwma_PU_20-55
CI=3.35


[56-71]:
1gwma_PU_56-71
CI=0.00


[72-92]:
1gwma_PU_72-92
CI=2.77


[93-116]:
1gwma_PU_93-116
CI=0.00


[117-135]:
1gwma_PU_117-135
CI=0.29


[136-153 ]:
1gwma_PU_136-153
CI=0.10