Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-139]:
1gwua_PU0_1-139
CI=3.47


[140-281]:
1gwua_PU0_140-281
CI=3.44


[282-306 ]:
1gwua_PU0_282-306
CI=0.37


Level 1
PU
Molecule needs Java 1.4 Structure


[1-139]:
1gwua_PU1_1-139
CI=3.47


[140-173]:
1gwua_PU1_140-173
CI=0.72


[174-221]:
1gwua_PU1_174-221
CI=2.28


[222-281]:
1gwua_PU1_222-281
CI=2.58


[282-306 ]:
1gwua_PU1_282-306
CI=0.37


Level 2
PU
Molecule needs Java 1.4 Structure


[1-139]:
1gwua_PU2_1-139
CI=3.47


[140-173]:
1gwua_PU2_140-173
CI=0.72


[174-221]:
1gwua_PU2_174-221
CI=2.28


[222-265]:
1gwua_PU2_222-265
CI=2.33


[266-281]:
1gwua_PU2_266-281
CI=0.68


[282-306 ]:
1gwua_PU2_282-306
CI=0.37


Level 3
PU
Molecule needs Java 1.4 Structure


[1-139]:
1gwua_PU3_1-139
CI=3.47


[140-157]:
1gwua_PU3_140-157
CI=0.50


[158-173]:
1gwua_PU3_158-173
CI=0.11


[174-221]:
1gwua_PU3_174-221
CI=2.28


[222-265]:
1gwua_PU3_222-265
CI=2.33


[266-281]:
1gwua_PU3_266-281
CI=0.68


[282-306 ]:
1gwua_PU3_282-306
CI=0.37


Level 4
PU
Molecule needs Java 1.4 Structure


[1-33]:
1gwua_PU4_1-33
CI=0.23


[34-139]:
1gwua_PU4_34-139
CI=3.45


[140-157]:
1gwua_PU4_140-157
CI=0.50


[158-173]:
1gwua_PU4_158-173
CI=0.11


[174-221]:
1gwua_PU4_174-221
CI=2.28


[222-265]:
1gwua_PU4_222-265
CI=2.33


[266-281]:
1gwua_PU4_266-281
CI=0.68


[282-306 ]:
1gwua_PU4_282-306
CI=0.37


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1gwua_PU5_1-17
CI=0.11


[18-33]:
1gwua_PU5_18-33
CI=0.34


[34-139]:
1gwua_PU5_34-139
CI=3.45


[140-157]:
1gwua_PU5_140-157
CI=0.50


[158-173]:
1gwua_PU5_158-173
CI=0.11


[174-221]:
1gwua_PU5_174-221
CI=2.28


[222-265]:
1gwua_PU5_222-265
CI=2.33


[266-281]:
1gwua_PU5_266-281
CI=0.68


[282-306 ]:
1gwua_PU5_282-306
CI=0.37


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1gwua_PU6_1-17
CI=0.11


[18-33]:
1gwua_PU6_18-33
CI=0.34


[34-78]:
1gwua_PU6_34-78
CI=1.65


[79-96]:
1gwua_PU6_79-96
CI=0.29


[97-139]:
1gwua_PU6_97-139
CI=1.10


[140-157]:
1gwua_PU6_140-157
CI=0.50


[158-173]:
1gwua_PU6_158-173
CI=0.11


[174-221]:
1gwua_PU6_174-221
CI=2.28


[222-265]:
1gwua_PU6_222-265
CI=2.33


[266-281]:
1gwua_PU6_266-281
CI=0.68


[282-306 ]:
1gwua_PU6_282-306
CI=0.37


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1gwua_PU7_1-17
CI=0.11


[18-33]:
1gwua_PU7_18-33
CI=0.34


[34-78]:
1gwua_PU7_34-78
CI=1.65


[79-96]:
1gwua_PU7_79-96
CI=0.29


[97-123]:
1gwua_PU7_97-123
CI=0.96


[124-139]:
1gwua_PU7_124-139
CI=0.00


[140-157]:
1gwua_PU7_140-157
CI=0.50


[158-173]:
1gwua_PU7_158-173
CI=0.11


[174-221]:
1gwua_PU7_174-221
CI=2.28


[222-265]:
1gwua_PU7_222-265
CI=2.33


[266-281]:
1gwua_PU7_266-281
CI=0.68


[282-306 ]:
1gwua_PU7_282-306
CI=0.37


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1gwua_PU8_1-17
CI=0.11


[18-33]:
1gwua_PU8_18-33
CI=0.34


[34-54]:
1gwua_PU8_34-54
CI=0.97


[55-78]:
1gwua_PU8_55-78
CI=0.85


[79-96]:
1gwua_PU8_79-96
CI=0.29


[97-123]:
1gwua_PU8_97-123
CI=0.96


[124-139]:
1gwua_PU8_124-139
CI=0.00


[140-157]:
1gwua_PU8_140-157
CI=0.50


[158-173]:
1gwua_PU8_158-173
CI=0.11


[174-221]:
1gwua_PU8_174-221
CI=2.28


[222-265]:
1gwua_PU8_222-265
CI=2.33


[266-281]:
1gwua_PU8_266-281
CI=0.68


[282-306 ]:
1gwua_PU8_282-306
CI=0.37


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1gwua_PU9_1-17
CI=0.11


[18-33]:
1gwua_PU9_18-33
CI=0.34


[34-54]:
1gwua_PU9_34-54
CI=0.97


[55-78]:
1gwua_PU9_55-78
CI=0.85


[79-96]:
1gwua_PU9_79-96
CI=0.29


[97-123]:
1gwua_PU9_97-123
CI=0.96


[124-139]:
1gwua_PU9_124-139
CI=0.00


[140-157]:
1gwua_PU9_140-157
CI=0.50


[158-173]:
1gwua_PU9_158-173
CI=0.11


[174-221]:
1gwua_PU9_174-221
CI=2.28


[222-244]:
1gwua_PU9_222-244
CI=1.35


[245-265]:
1gwua_PU9_245-265
CI=0.89


[266-281]:
1gwua_PU9_266-281
CI=0.68


[282-306 ]:
1gwua_PU9_282-306
CI=0.37


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1gwua_PU_1-17
CI=0.11


[18-33]:
1gwua_PU_18-33
CI=0.34


[34-54]:
1gwua_PU_34-54
CI=0.97


[55-78]:
1gwua_PU_55-78
CI=0.85


[79-96]:
1gwua_PU_79-96
CI=0.29


[97-123]:
1gwua_PU_97-123
CI=0.96


[124-139]:
1gwua_PU_124-139
CI=0.00


[140-157]:
1gwua_PU_140-157
CI=0.50


[158-173]:
1gwua_PU_158-173
CI=0.11


[174-198]:
1gwua_PU_174-198
CI=1.51


[199-221]:
1gwua_PU_199-221
CI=0.32


[222-244]:
1gwua_PU_222-244
CI=1.35


[245-265]:
1gwua_PU_245-265
CI=0.89


[266-281]:
1gwua_PU_266-281
CI=0.68


[282-306 ]:
1gwua_PU_282-306
CI=0.37